Strain Fitness in Shewanella loihica PV-4 around Shew_1874

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
2,154,650	+		Shew_1873	0.67	-0.2
2,154,759	-		Shew_1873	0.71	+0.1
2,155,131	+		Shew_1873	0.86	+1.3
2,155,158	-		Shew_1873	0.87	+1.0
2,155,164	-		Shew_1873	0.87	+0.2
2,155,190	-		Shew_1873	0.88	+0.1
2,155,478	-				+0.4
2,155,796	-		Shew_1874	0.14	+0.3
2,155,947	-		Shew_1874	0.24	-0.2
2,156,049	+		Shew_1874	0.30	-0.7
2,156,057	-		Shew_1874	0.31	-0.3
2,156,370	+		Shew_1874	0.51	+0.1
2,156,588	-		Shew_1874	0.64	-2.6
2,157,061	+				-0.5
2,157,076	-				-0.2
2,157,165	+				+0.2
2,157,298	-				+0.2
2,157,298	-				-0.4
2,157,317	+				-0.0
2,157,368	-				-0.4
2,157,611	+				-0.5
2,157,768	-				+1.2
2,157,839	+				+0.0
2,158,066	-				+0.0
2,158,128	+				+0.0