Strain Fitness in Shewanella loihica PV-4 around Shew_1807

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
2,070,538	-		Shew_1806	0.56	+0.5
2,070,544	+		Shew_1806	0.57	+0.9
2,070,610	+		Shew_1806	0.61	+0.1
2,070,654	-		Shew_1806	0.65	-0.0
2,070,752	-		Shew_1806	0.72	-0.2
2,070,822	+		Shew_1806	0.77	+4.0
2,071,040	+				-1.0
2,071,045	+				+4.3
2,071,143	+				-0.6
2,071,245	-				-0.2
2,071,506	+		Shew_1807	0.22	-0.5
2,071,506	+		Shew_1807	0.22	-1.2
2,071,803	-		Shew_1807	0.51	-0.5
2,072,179	-		Shew_1807	0.88	-1.0
2,072,391	+				-0.2
2,072,669	-		Shew_1808	0.16	+0.3
2,073,043	-		Shew_1808	0.32	-0.1