Strain Fitness in Shewanella loihica PV-4 around Shew_1614

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrrmA and Shew_1614 are separated by 302 nucleotidesShew_1614 and Shew_1615 are separated by 478 nucleotides Shew_1613: rrmA - 23S rRNA methyltransferase A (RefSeq), at 1,845,113 to 1,845,925 rrmA Shew_1614: Shew_1614 - cold-shock DNA-binding domain-containing protein (RefSeq), at 1,846,228 to 1,846,434 _1614 Shew_1615: Shew_1615 - ABC transporter-related protein (RefSeq), at 1,846,913 to 1,847,818 _1615 Position (kb) 1846 1847Strain fitness (log2 ratio) -1 0 1at 1845.379 kb on + strand, within rrmAat 1845.875 kb on + strandat 1846.816 kb on + strandat 1846.944 kb on - strandat 1847.380 kb on - strand, within Shew_1615

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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1,845,379 + rrmA Shew_1613 0.33 +0.1
1,845,875 + -0.3
1,846,816 + -0.0
1,846,944 - -0.3
1,847,380 - Shew_1615 0.52 -0.1

Or see this region's nucleotide sequence