Strain Fitness in Shewanella loihica PV-4 around Shew_1568

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,799,535	-		Shew_1568	0.25	-0.3
1,799,535	-		Shew_1568	0.25	-1.2
1,799,644	-		Shew_1568	0.41	-0.5
1,799,763	+		Shew_1568	0.57	-0.3
1,800,035	+				-0.2
1,800,252	+	aat	Shew_1569	0.28	-0.7
1,800,268	-	aat	Shew_1569	0.30	-1.1
1,800,462	+	aat	Shew_1569	0.58	-0.0
1,800,658	-	aat	Shew_1569	0.85	+0.7
1,800,666	-	aat	Shew_1569	0.86	+0.3
1,800,743	+				-0.8
1,800,876	+		Shew_1570	0.12	+0.1
1,800,980	-		Shew_1570	0.34	+0.3