Strain Fitness in Shewanella loihica PV-4 around Shew_1327

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,538,177	-		Shew_1325	0.80	+0.2
1,538,245	+				-0.2
1,538,409	-		Shew_1326	0.15	-0.3
1,538,796	-		Shew_1326	0.65	-0.3
1,538,853	-		Shew_1326	0.73	-0.4
1,538,872	-		Shew_1326	0.75	+0.4
1,539,131	-		Shew_1327	0.23	+0.2
1,539,167	-		Shew_1327	0.38	+0.3
1,539,209	-		Shew_1327	0.56	-1.9
1,539,265	+		Shew_1327	0.80	-2.0
1,539,277	+		Shew_1327	0.85	-0.2
1,539,402	+				+0.5
1,539,402	+				+4.2
1,539,410	-				+1.0
1,539,529	+		Shew_1328	0.18	+0.4
1,539,578	+		Shew_1328	0.25	-0.1
1,539,810	-		Shew_1328	0.56	-0.0
1,539,820	-		Shew_1328	0.58	-0.1
1,539,836	-		Shew_1328	0.60	-0.3
1,540,004	+		Shew_1328	0.83	-0.8
1,540,155	+				+0.6