Strain Fitness in Shewanella loihica PV-4 around Shew_1280

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,480,426	+				+0.4
1,480,441	+				-0.2
1,480,614	-				+0.5
1,480,641	+				+0.0
1,480,750	+				-0.3
1,480,889	+		Shew_1280	0.35	+0.4
1,480,897	-		Shew_1280	0.37	-0.4
1,480,897	-		Shew_1280	0.37	-2.6
1,481,122	+		Shew_1280	0.90	-1.1
1,481,122	+		Shew_1280	0.90	+0.4
1,481,414	+		Shew_1281	0.39	-0.1
1,481,640	-		Shew_1281	0.69	+0.2
1,482,082	+				-0.8