Strain Fitness in Shewanella loihica PV-4 around Shew_1166

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,341,486	-				-0.4
1,341,494	-				-0.2
1,341,502	+				-0.6
1,341,505	-				+0.2
1,341,587	+				+0.2
1,341,629	-				-0.6
1,341,655	-				-0.1
1,342,126	+				+0.3
1,342,213	+				-1.0
1,342,730	+		Shew_1166	0.39	-0.3
1,342,755	+		Shew_1166	0.42	-0.6
1,342,847	+		Shew_1166	0.50	-0.2
1,342,855	-		Shew_1166	0.50	+0.1
1,342,902	-		Shew_1166	0.54	-0.3
1,343,067	+		Shew_1166	0.69	-2.0
1,343,123	+		Shew_1166	0.74	-0.9
1,343,172	+		Shew_1166	0.78	-0.6
1,344,100	-				+0.0
1,344,254	+		Shew_1167	0.14	+0.0
1,344,262	-		Shew_1167	0.14	-0.3
1,344,262	-		Shew_1167	0.14	+0.5
1,344,262	-		Shew_1167	0.14	-1.3
1,344,262	-		Shew_1167	0.14	-0.6