Strain Fitness in Shewanella loihica PV-4 around Shew_1118

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,292,235	+		Shew_1117	0.35	-0.1
1,292,243	-		Shew_1117	0.35	+0.0
1,292,373	+		Shew_1117	0.47	-1.3
1,292,547	-		Shew_1117	0.62	+0.3
1,292,688	+		Shew_1117	0.75	-0.5
1,292,858	+		Shew_1117	0.90	-0.0
1,292,899	+				-0.2
1,292,899	+				-0.3
1,293,076	-				-1.4
1,293,318	+		Shew_1118	0.15	-0.1
1,293,419	+		Shew_1118	0.24	-0.7
1,293,940	+		Shew_1118	0.69	-0.3
1,293,953	-		Shew_1118	0.70	-0.5
1,294,350	+				+0.5
1,294,665	+				+0.8
1,294,726	+		Shew_1119	0.13	+0.1
1,294,880	-		Shew_1119	0.25	+0.1
1,295,023	+		Shew_1119	0.36	-0.9