Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0958 and Shew_0959 are separated by 147 nucleotides Shew_0959 and Shew_0960 are separated by 212 nucleotides Shew_0960 and Shew_0961 are separated by 267 nucleotides Shew_0961 and Shew_0962 are separated by 125 nucleotides
Shew_0958: Shew_0958 - hypothetical protein (RefSeq), at 1,101,533 to 1,102,990
_0958
Shew_0959: Shew_0959 - hypothetical protein (RefSeq), at 1,103,138 to 1,103,614
_0959
Shew_0960: Shew_0960 - hypothetical protein (RefSeq), at 1,103,827 to 1,104,777
_0960
Shew_0961: Shew_0961 - hypothetical protein (RefSeq), at 1,105,045 to 1,105,389
_0961
Shew_0962: Shew_0962 - hypothetical protein (RefSeq), at 1,105,515 to 1,105,685
_0962
Position (kb) 1103
1104
1105 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1102.860 kb on + strand at 1103.251 kb on + strand, within Shew_0959 at 1103.259 kb on - strand, within Shew_0959 at 1103.259 kb on - strand, within Shew_0959 at 1103.530 kb on + strand, within Shew_0959 at 1105.402 kb on + strand at 1105.410 kb on - strand at 1105.654 kb on - strand, within Shew_0962 at 1105.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 1,102,860 + +0.4 1,103,251 + Shew_0959 0.24 -0.5 1,103,259 - Shew_0959 0.25 +0.3 1,103,259 - Shew_0959 0.25 -0.4 1,103,530 + Shew_0959 0.82 -0.2 1,105,402 + +4.5 1,105,410 - +0.1 1,105,654 - Shew_0962 0.81 -1.3 1,105,715 - -0.3
Or see this region's nucleotide sequence