Strain Fitness in Shewanella loihica PV-4 around Shew_0952

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,093,319	-		Shew_0951	0.35	-0.2
1,093,500	+		Shew_0951	0.50	+0.3
1,093,559	-		Shew_0951	0.55	+0.6
1,093,581	-		Shew_0951	0.57	-0.2
1,093,817	+		Shew_0951	0.77	-0.1
1,093,965	-		Shew_0951	0.89	-0.2
1,094,070	-				+0.7
1,094,070	-				+3.1
1,094,177	+				+0.7
1,094,212	+				+0.3
1,094,362	-				+1.0
1,094,987	+		Shew_0952	0.44	+0.5
1,095,137	-		Shew_0952	0.53	-0.1
1,095,248	-		Shew_0952	0.59	-0.9
1,095,253	-		Shew_0952	0.59	+0.2
1,095,609	-		Shew_0952	0.79	+0.8
1,095,678	-		Shew_0952	0.83	+0.0
1,095,678	-		Shew_0952	0.83	+0.6
1,096,048	+				+0.3
1,096,056	-				+0.1
1,096,213	-				-0.0
1,096,435	-				+0.5
1,096,518	-				+0.3
1,096,549	-				-0.3
1,096,611	-		Shew_0953	0.13	-0.1
1,096,909	-		Shew_0953	0.37	+1.4
1,096,925	+		Shew_0953	0.38	+0.6