Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0719 and Shew_0720 are separated by 57 nucleotides Shew_0720 and Shew_0721 are separated by 349 nucleotides Shew_0721 and Shew_0722 are separated by 11 nucleotides Shew_0722 and Shew_0723 are separated by 64 nucleotides
Shew_0719: Shew_0719 - periplasmic binding protein (RefSeq), at 819,519 to 820,343
_0719
Shew_0720: Shew_0720 - hypothetical protein (RefSeq), at 820,401 to 820,787
_0720
Shew_0721: Shew_0721 - RND family efflux transporter MFP subunit (RefSeq), at 821,137 to 822,399
_0721
Shew_0722: Shew_0722 - hypothetical protein (RefSeq), at 822,411 to 822,647
_0722
Shew_0723: Shew_0723 - ABC transporter-related protein (RefSeq), at 822,712 to 823,434
_0723
Position (kb) 821
822
823 Strain fitness (log2 ratio) -1
0
1
2
3 at 820.323 kb on + strand at 820.323 kb on + strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.566 kb on + strand, within Shew_0720 at 820.661 kb on - strand, within Shew_0720 at 821.214 kb on - strand at 821.253 kb on - strand at 821.375 kb on + strand, within Shew_0721 at 821.405 kb on + strand, within Shew_0721 at 821.489 kb on + strand, within Shew_0721 at 821.529 kb on - strand, within Shew_0721 at 821.539 kb on - strand, within Shew_0721 at 821.568 kb on + strand, within Shew_0721 at 821.568 kb on + strand, within Shew_0721 at 821.703 kb on + strand, within Shew_0721 at 822.237 kb on + strand, within Shew_0721 at 822.245 kb on - strand, within Shew_0721 at 822.305 kb on + strand at 822.305 kb on + strand at 822.305 kb on + strand at 822.313 kb on - strand at 822.499 kb on - strand, within Shew_0722 at 822.686 kb on - strand at 822.925 kb on - strand, within Shew_0723 at 823.038 kb on - strand, within Shew_0723 at 823.071 kb on - strand, within Shew_0723 at 823.378 kb on - strand at 823.380 kb on + strand at 823.380 kb on + strand at 823.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 820,323 + +0.1 820,323 + +1.5 820,331 - +0.3 820,331 - +1.2 820,331 - +0.6 820,331 - +0.2 820,566 + Shew_0720 0.43 +0.1 820,661 - Shew_0720 0.67 +0.3 821,214 - -0.4 821,253 - +0.6 821,375 + Shew_0721 0.19 +0.5 821,405 + Shew_0721 0.21 -0.2 821,489 + Shew_0721 0.28 -0.1 821,529 - Shew_0721 0.31 +3.4 821,539 - Shew_0721 0.32 +0.0 821,568 + Shew_0721 0.34 -0.1 821,568 + Shew_0721 0.34 +0.4 821,703 + Shew_0721 0.45 -0.6 822,237 + Shew_0721 0.87 +0.1 822,245 - Shew_0721 0.88 +0.1 822,305 + -0.6 822,305 + +0.3 822,305 + +0.1 822,313 - +0.1 822,499 - Shew_0722 0.37 +0.9 822,686 - +0.6 822,925 - Shew_0723 0.29 +0.0 823,038 - Shew_0723 0.45 -0.5 823,071 - Shew_0723 0.50 +0.3 823,378 - -0.3 823,380 + +0.3 823,380 + +0.4 823,380 + +0.3
Or see this region's nucleotide sequence