Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0712 and Shew_0713 overlap by 14 nucleotides Shew_0713 and cobT are separated by 122 nucleotides
Shew_0712: Shew_0712 - ABC transporter-related protein (RefSeq), at 812,368 to 813,342
_0712
Shew_0713: Shew_0713 - transport system permease protein (RefSeq), at 813,329 to 814,372
_0713
Shew_0714: cobT - nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (RefSeq), at 814,495 to 815,523
cobT
Position (kb) 813
814
815 Strain fitness (log2 ratio) -2
-1
0
1 at 812.564 kb on + strand, within Shew_0712 at 812.773 kb on - strand, within Shew_0712 at 812.868 kb on + strand, within Shew_0712 at 812.883 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.014 kb on - strand, within Shew_0712 at 813.014 kb on - strand, within Shew_0712 at 813.014 kb on - strand, within Shew_0712 at 813.096 kb on + strand, within Shew_0712 at 813.104 kb on - strand, within Shew_0712 at 813.245 kb on - strand at 813.250 kb on - strand at 813.361 kb on + strand at 813.383 kb on + strand at 813.657 kb on + strand, within Shew_0713 at 813.726 kb on + strand, within Shew_0713 at 813.891 kb on - strand, within Shew_0713 at 813.909 kb on + strand, within Shew_0713 at 813.914 kb on + strand, within Shew_0713 at 813.917 kb on - strand, within Shew_0713 at 813.927 kb on - strand, within Shew_0713 at 814.056 kb on + strand, within Shew_0713 at 814.781 kb on - strand, within cobT at 814.879 kb on + strand, within cobT
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 812,564 + Shew_0712 0.20 -0.5 812,773 - Shew_0712 0.42 -1.9 812,868 + Shew_0712 0.51 -0.4 812,883 + Shew_0712 0.53 -0.4 813,006 + Shew_0712 0.65 -0.1 813,006 + Shew_0712 0.65 +0.6 813,006 + Shew_0712 0.65 +1.0 813,006 + Shew_0712 0.65 -0.1 813,014 - Shew_0712 0.66 +0.3 813,014 - Shew_0712 0.66 +0.7 813,014 - Shew_0712 0.66 +0.7 813,096 + Shew_0712 0.75 +0.5 813,104 - Shew_0712 0.75 +0.5 813,245 - +0.5 813,250 - -0.6 813,361 + +0.8 813,383 + +0.3 813,657 + Shew_0713 0.31 -0.8 813,726 + Shew_0713 0.38 -2.6 813,891 - Shew_0713 0.54 -0.2 813,909 + Shew_0713 0.56 -1.0 813,914 + Shew_0713 0.56 -1.8 813,917 - Shew_0713 0.56 +0.3 813,927 - Shew_0713 0.57 -0.1 814,056 + Shew_0713 0.70 +0.0 814,781 - cobT Shew_0714 0.28 -0.0 814,879 + cobT Shew_0714 0.37 +0.0
Or see this region's nucleotide sequence