Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0678 and Shew_0679 are separated by 64 nucleotides Shew_0679 and Shew_0680 are separated by 87 nucleotides Shew_0680 and Shew_0681 are separated by 109 nucleotides
Shew_0678: Shew_0678 - protoporphyrinogen oxidase (RefSeq), at 772,995 to 773,516
_0678
Shew_0679: Shew_0679 - hypothetical protein (RefSeq), at 773,581 to 774,105
_0679
Shew_0680: Shew_0680 - LysR family transcriptional regulator (RefSeq), at 774,193 to 775,065
_0680
Shew_0681: Shew_0681 - penicillin V acylase-like protein (RefSeq), at 775,175 to 776,254
_0681
Position (kb) 774
775
776 Strain fitness (log2 ratio) -1
0
1 at 773.262 kb on - strand, within Shew_0678 at 773.262 kb on - strand, within Shew_0678 at 773.486 kb on + strand at 773.577 kb on - strand at 774.011 kb on + strand, within Shew_0679 at 774.011 kb on + strand, within Shew_0679 at 774.110 kb on + strand at 774.140 kb on - strand at 774.141 kb on - strand at 774.143 kb on + strand at 774.238 kb on + strand at 774.529 kb on + strand, within Shew_0680 at 774.613 kb on - strand, within Shew_0680 at 774.699 kb on + strand, within Shew_0680 at 774.755 kb on + strand, within Shew_0680 at 775.320 kb on - strand, within Shew_0681 at 775.402 kb on + strand, within Shew_0681 at 775.410 kb on - strand, within Shew_0681 at 775.450 kb on + strand, within Shew_0681 at 775.557 kb on - strand, within Shew_0681 at 775.711 kb on + strand, within Shew_0681 at 775.719 kb on - strand, within Shew_0681 at 775.779 kb on + strand, within Shew_0681 at 775.859 kb on - strand, within Shew_0681 at 775.929 kb on + strand, within Shew_0681 at 775.932 kb on - strand, within Shew_0681 at 776.042 kb on + strand, within Shew_0681
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 773,262 - Shew_0678 0.51 +0.3 773,262 - Shew_0678 0.51 -0.1 773,486 + -0.5 773,577 - -0.2 774,011 + Shew_0679 0.82 +0.0 774,011 + Shew_0679 0.82 +0.1 774,110 + -0.4 774,140 - -0.3 774,141 - +0.6 774,143 + +0.4 774,238 + +0.1 774,529 + Shew_0680 0.38 -0.1 774,613 - Shew_0680 0.48 -1.2 774,699 + Shew_0680 0.58 +0.2 774,755 + Shew_0680 0.64 -0.2 775,320 - Shew_0681 0.13 +0.7 775,402 + Shew_0681 0.21 -1.0 775,410 - Shew_0681 0.22 -0.1 775,450 + Shew_0681 0.25 +0.2 775,557 - Shew_0681 0.35 -0.6 775,711 + Shew_0681 0.50 +0.3 775,719 - Shew_0681 0.50 -0.6 775,779 + Shew_0681 0.56 -0.3 775,859 - Shew_0681 0.63 +0.8 775,929 + Shew_0681 0.70 +0.2 775,932 - Shew_0681 0.70 +0.6 776,042 + Shew_0681 0.80 +0.7
Or see this region's nucleotide sequence