Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0635 and Shew_0636 are separated by 137 nucleotides Shew_0636 and Shew_0637 are separated by 29 nucleotides Shew_0637 and Shew_0638 are separated by 182 nucleotides
Shew_0635: Shew_0635 - hypothetical protein (RefSeq), at 722,474 to 723,169
_0635
Shew_0636: Shew_0636 - hypothetical protein (RefSeq), at 723,307 to 723,765
_0636
Shew_0637: Shew_0637 - hypothetical protein (RefSeq), at 723,795 to 724,472
_0637
Shew_0638: Shew_0638 - cell surface receptor IPT/TIG domain-containing protein (RefSeq), at 724,655 to 728,878
_0638
Position (kb) 723
724 Strain fitness (log2 ratio) -2
-1
0
1 at 722.473 kb on + strand at 722.546 kb on - strand, within Shew_0635 at 722.627 kb on + strand, within Shew_0635 at 722.655 kb on - strand, within Shew_0635 at 722.655 kb on - strand, within Shew_0635 at 722.920 kb on + strand, within Shew_0635 at 723.496 kb on - strand, within Shew_0636 at 723.649 kb on + strand, within Shew_0636 at 723.662 kb on - strand, within Shew_0636 at 723.755 kb on + strand at 724.451 kb on + strand at 724.496 kb on + strand at 724.676 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 722,473 + -0.2 722,546 - Shew_0635 0.10 +0.5 722,627 + Shew_0635 0.22 -0.7 722,655 - Shew_0635 0.26 +0.4 722,655 - Shew_0635 0.26 -1.8 722,920 + Shew_0635 0.64 -0.0 723,496 - Shew_0636 0.41 +0.4 723,649 + Shew_0636 0.75 +0.6 723,662 - Shew_0636 0.77 -0.1 723,755 + +0.2 724,451 + -0.1 724,496 + +0.0 724,676 + +0.2
Or see this region's nucleotide sequence