Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0438 and Shew_0439 are separated by 107 nucleotides Shew_0439 and Shew_0440 are separated by 8 nucleotides Shew_0440 and Shew_0441 are separated by 130 nucleotides
Shew_0438: Shew_0438 - GumN family protein (RefSeq), at 488,537 to 489,421
_0438
Shew_0439: Shew_0439 - CheD, stimulates methylation of MCP proteins (RefSeq), at 489,529 to 490,161
_0439
Shew_0440: Shew_0440 - methyltransferase type 12 (RefSeq), at 490,170 to 491,024
_0440
Shew_0441: Shew_0441 - dehydratase (RefSeq), at 491,155 to 491,994
_0441
Position (kb) 489
490
491 Strain fitness (log2 ratio) -1
0
1 at 489.092 kb on - strand, within Shew_0438 at 489.658 kb on + strand, within Shew_0439 at 489.916 kb on - strand, within Shew_0439 at 490.044 kb on + strand, within Shew_0439 at 490.214 kb on - strand at 490.405 kb on - strand, within Shew_0440 at 490.551 kb on - strand, within Shew_0440 at 490.600 kb on - strand, within Shew_0440 at 490.607 kb on + strand, within Shew_0440 at 490.742 kb on + strand, within Shew_0440 at 490.742 kb on + strand, within Shew_0440 at 490.742 kb on + strand, within Shew_0440 at 491.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 489,092 - Shew_0438 0.63 -0.2 489,658 + Shew_0439 0.20 +0.3 489,916 - Shew_0439 0.61 -0.1 490,044 + Shew_0439 0.81 -0.2 490,214 - +0.4 490,405 - Shew_0440 0.27 +0.2 490,551 - Shew_0440 0.45 +0.3 490,600 - Shew_0440 0.50 +0.8 490,607 + Shew_0440 0.51 +0.3 490,742 + Shew_0440 0.67 +0.0 490,742 + Shew_0440 0.67 +0.7 490,742 + Shew_0440 0.67 -0.4 491,118 - +0.3
Or see this region's nucleotide sequence