Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0366 and Shew_0367 overlap by 1 nucleotides Shew_0367 and Shew_0368 overlap by 4 nucleotides Shew_0368 and Shew_0369 overlap by 4 nucleotides Shew_0369 and Shew_0370 are separated by 10 nucleotides
Shew_0366: Shew_0366 - ubiquinol oxidase, subunit II (RefSeq), at 414,288 to 415,238
_0366
Shew_0367: Shew_0367 - cytochrome-c oxidase (RefSeq), at 415,238 to 417,226
_0367
Shew_0368: Shew_0368 - cytochrome c oxidase, subunit III (RefSeq), at 417,223 to 417,849
_0368
Shew_0369: Shew_0369 - cytochrome C oxidase subunit IV (RefSeq), at 417,846 to 418,172
_0369
Shew_0370: Shew_0370 - protoheme IX farnesyltransferase (RefSeq), at 418,183 to 419,109
_0370
Position (kb) 415
416
417
418 Strain fitness (log2 ratio) -1
0
1 at 414.338 kb on - strand at 414.347 kb on + strand at 414.452 kb on + strand, within Shew_0366 at 414.783 kb on + strand, within Shew_0366 at 414.783 kb on + strand, within Shew_0366 at 414.829 kb on - strand, within Shew_0366 at 415.257 kb on + strand at 415.636 kb on - strand, within Shew_0367 at 415.663 kb on - strand, within Shew_0367 at 416.096 kb on + strand, within Shew_0367 at 416.106 kb on - strand, within Shew_0367 at 416.208 kb on - strand, within Shew_0367 at 416.539 kb on - strand, within Shew_0367 at 416.782 kb on - strand, within Shew_0367 at 416.867 kb on - strand, within Shew_0367 at 416.911 kb on + strand, within Shew_0367 at 416.919 kb on - strand, within Shew_0367 at 416.964 kb on - strand, within Shew_0367 at 417.047 kb on + strand at 417.083 kb on - strand at 417.251 kb on + strand at 417.259 kb on - strand at 417.303 kb on - strand, within Shew_0368 at 417.470 kb on - strand, within Shew_0368 at 417.550 kb on + strand, within Shew_0368 at 417.558 kb on - strand, within Shew_0368 at 417.572 kb on + strand, within Shew_0368 at 417.580 kb on - strand, within Shew_0368 at 417.922 kb on + strand, within Shew_0369 at 417.944 kb on + strand, within Shew_0369 at 418.128 kb on - strand, within Shew_0369
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 414,338 - +0.7 414,347 + +0.2 414,452 + Shew_0366 0.17 -0.5 414,783 + Shew_0366 0.52 -0.1 414,783 + Shew_0366 0.52 -0.2 414,829 - Shew_0366 0.57 +0.1 415,257 + +0.5 415,636 - Shew_0367 0.20 +0.2 415,663 - Shew_0367 0.21 +1.4 416,096 + Shew_0367 0.43 +0.2 416,106 - Shew_0367 0.44 +0.8 416,208 - Shew_0367 0.49 +0.5 416,539 - Shew_0367 0.65 +0.7 416,782 - Shew_0367 0.78 +0.7 416,867 - Shew_0367 0.82 +0.1 416,911 + Shew_0367 0.84 +0.3 416,919 - Shew_0367 0.85 +0.2 416,964 - Shew_0367 0.87 +0.5 417,047 + -0.1 417,083 - -0.3 417,251 + +0.6 417,259 - -0.6 417,303 - Shew_0368 0.13 -0.1 417,470 - Shew_0368 0.39 -0.8 417,550 + Shew_0368 0.52 +0.0 417,558 - Shew_0368 0.53 -0.1 417,572 + Shew_0368 0.56 -0.3 417,580 - Shew_0368 0.57 +0.3 417,922 + Shew_0369 0.23 +0.1 417,944 + Shew_0369 0.30 +0.3 418,128 - Shew_0369 0.86 -1.7
Or see this region's nucleotide sequence