Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0294 and Shew_0295 are separated by 80 nucleotides Shew_0295 and Shew_0296 are separated by 378 nucleotides Shew_0296 and Shew_0297 are separated by 89 nucleotides
Shew_0294: Shew_0294 - alanine--glyoxylate transaminase (RefSeq), at 315,341 to 316,483
_0294
Shew_0295: Shew_0295 - hypothetical protein (RefSeq), at 316,564 to 316,989
_0295
Shew_0296: Shew_0296 - heat shock protein Hsp20 (RefSeq), at 317,368 to 317,838
_0296
Shew_0297: Shew_0297 - hypothetical protein (RefSeq), at 317,928 to 319,835
_0297
Position (kb) 317
318 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 316.460 kb on + strand at 316.593 kb on + strand at 316.598 kb on + strand at 316.603 kb on + strand at 316.697 kb on - strand, within Shew_0295 at 316.705 kb on + strand, within Shew_0295 at 316.878 kb on + strand, within Shew_0295 at 316.922 kb on - strand, within Shew_0295 at 317.028 kb on + strand at 317.213 kb on + strand at 317.223 kb on + strand at 317.223 kb on + strand at 317.294 kb on + strand at 317.768 kb on + strand, within Shew_0296 at 317.851 kb on + strand at 318.059 kb on - strand at 318.289 kb on + strand, within Shew_0297 at 318.289 kb on + strand, within Shew_0297 at 318.297 kb on - strand, within Shew_0297 at 318.297 kb on - strand, within Shew_0297 at 318.297 kb on - strand, within Shew_0297 at 318.297 kb on - strand, within Shew_0297 at 318.346 kb on + strand, within Shew_0297 at 318.448 kb on + strand, within Shew_0297 at 318.653 kb on + strand, within Shew_0297 at 318.675 kb on + strand, within Shew_0297
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 316,460 + +0.1 316,593 + +0.3 316,598 + +0.1 316,603 + -0.5 316,697 - Shew_0295 0.31 +0.5 316,705 + Shew_0295 0.33 -0.1 316,878 + Shew_0295 0.74 +0.6 316,922 - Shew_0295 0.84 +1.5 317,028 + -0.3 317,213 + -0.3 317,223 + -1.5 317,223 + +0.3 317,294 + -0.3 317,768 + Shew_0296 0.85 +4.7 317,851 + -0.8 318,059 - +0.1 318,289 + Shew_0297 0.19 +0.3 318,289 + Shew_0297 0.19 +0.0 318,297 - Shew_0297 0.19 +0.1 318,297 - Shew_0297 0.19 +0.2 318,297 - Shew_0297 0.19 -0.3 318,297 - Shew_0297 0.19 +0.0 318,346 + Shew_0297 0.22 +0.4 318,448 + Shew_0297 0.27 -0.4 318,653 + Shew_0297 0.38 -1.2 318,675 + Shew_0297 0.39 -0.1
Or see this region's nucleotide sequence