Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0190 and Shew_0191 are separated by 332 nucleotides Shew_0191 and Shew_0192 are separated by 191 nucleotides Shew_0192 and Shew_0193 are separated by 411 nucleotides
Shew_0190: Shew_0190 - cytochrome c biogenesis protein CcmA (RefSeq), at 196,133 to 196,783
_0190
Shew_0191: Shew_0191 - cytochrome c, class I (RefSeq), at 197,116 to 197,409
_0191
Shew_0192: Shew_0192 - TPR repeat-containing protein (RefSeq), at 197,601 to 198,851
_0192
Shew_0193: Shew_0193 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 199,263 to 201,239
_0193
Position (kb) 197
198
199 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 196.862 kb on + strand at 196.963 kb on + strand at 196.963 kb on + strand at 196.971 kb on - strand at 197.058 kb on - strand at 197.076 kb on + strand at 197.149 kb on + strand, within Shew_0191 at 197.194 kb on + strand, within Shew_0191 at 197.202 kb on - strand, within Shew_0191 at 197.310 kb on - strand, within Shew_0191 at 197.620 kb on - strand at 197.664 kb on + strand at 197.755 kb on - strand, within Shew_0192 at 197.773 kb on - strand, within Shew_0192 at 197.773 kb on - strand, within Shew_0192 at 197.777 kb on + strand, within Shew_0192 at 197.787 kb on + strand, within Shew_0192 at 197.837 kb on + strand, within Shew_0192 at 197.950 kb on + strand, within Shew_0192 at 197.958 kb on - strand, within Shew_0192 at 198.200 kb on - strand, within Shew_0192 at 198.239 kb on - strand, within Shew_0192 at 198.253 kb on - strand, within Shew_0192 at 198.333 kb on + strand, within Shew_0192 at 198.426 kb on - strand, within Shew_0192 at 198.508 kb on - strand, within Shew_0192 at 198.552 kb on + strand, within Shew_0192 at 198.555 kb on - strand, within Shew_0192 at 198.560 kb on - strand, within Shew_0192 at 198.808 kb on - strand at 198.813 kb on - strand at 198.818 kb on - strand at 198.957 kb on - strand at 198.991 kb on - strand at 199.039 kb on + strand at 199.061 kb on + strand at 199.120 kb on - strand at 199.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 196,862 + -0.4 196,963 + -0.4 196,963 + +0.7 196,971 - +0.3 197,058 - +0.1 197,076 + +0.0 197,149 + Shew_0191 0.11 +0.4 197,194 + Shew_0191 0.27 +0.3 197,202 - Shew_0191 0.29 +4.3 197,310 - Shew_0191 0.66 +0.4 197,620 - -0.1 197,664 + -0.1 197,755 - Shew_0192 0.12 +0.6 197,773 - Shew_0192 0.14 +0.2 197,773 - Shew_0192 0.14 -0.1 197,777 + Shew_0192 0.14 +0.1 197,787 + Shew_0192 0.15 -0.5 197,837 + Shew_0192 0.19 +0.3 197,950 + Shew_0192 0.28 -0.6 197,958 - Shew_0192 0.29 +1.9 198,200 - Shew_0192 0.48 +0.5 198,239 - Shew_0192 0.51 +0.4 198,253 - Shew_0192 0.52 -0.3 198,333 + Shew_0192 0.59 +0.6 198,426 - Shew_0192 0.66 -0.2 198,508 - Shew_0192 0.73 +1.7 198,552 + Shew_0192 0.76 +1.9 198,555 - Shew_0192 0.76 +2.5 198,560 - Shew_0192 0.77 +3.0 198,808 - +2.3 198,813 - -1.7 198,818 - +1.9 198,957 - -0.3 198,991 - +0.5 199,039 + -0.3 199,061 + -0.2 199,120 - -1.2 199,177 + +0.6
Or see this region's nucleotide sequence