Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0083 and Shew_0084 are separated by 81 nucleotides Shew_0084 and Shew_0085 are separated by 75 nucleotides Shew_0085 and Shew_0086 are separated by 260 nucleotides
Shew_0083: Shew_0083 - MOSC domain-containing protein (RefSeq), at 96,244 to 96,936
_0083
Shew_0084: Shew_0084 - hypothetical protein (RefSeq), at 97,018 to 97,338
_0084
Shew_0085: Shew_0085 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 97,414 to 99,330
_0085
Shew_0086: Shew_0086 - electron-transferring-flavoproteindehydrogenase (RefSeq), at 99,591 to 101,240
_0086
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -1
0
1
2 at 96.658 kb on + strand, within Shew_0083 at 96.747 kb on - strand, within Shew_0083 at 96.763 kb on - strand, within Shew_0083 at 96.805 kb on - strand, within Shew_0083 at 97.217 kb on + strand, within Shew_0084 at 97.410 kb on - strand at 97.420 kb on - strand at 97.499 kb on - strand at 97.644 kb on + strand, within Shew_0085 at 97.644 kb on + strand, within Shew_0085 at 97.652 kb on - strand, within Shew_0085 at 97.833 kb on - strand, within Shew_0085 at 97.901 kb on + strand, within Shew_0085 at 98.288 kb on + strand, within Shew_0085 at 98.358 kb on + strand, within Shew_0085 at 98.398 kb on - strand, within Shew_0085 at 98.457 kb on - strand, within Shew_0085 at 98.459 kb on + strand, within Shew_0085 at 98.467 kb on - strand, within Shew_0085 at 98.510 kb on + strand, within Shew_0085 at 98.584 kb on + strand, within Shew_0085 at 98.628 kb on + strand, within Shew_0085 at 98.834 kb on - strand, within Shew_0085 at 99.029 kb on + strand, within Shew_0085 at 99.037 kb on - strand, within Shew_0085 at 99.117 kb on + strand, within Shew_0085 at 99.135 kb on + strand, within Shew_0085 at 99.179 kb on + strand at 99.179 kb on - strand at 99.179 kb on + strand at 99.210 kb on + strand at 99.293 kb on - strand at 99.352 kb on - strand at 99.352 kb on - strand at 99.352 kb on - strand at 99.363 kb on + strand at 99.365 kb on + strand at 99.417 kb on + strand at 99.640 kb on + strand at 99.757 kb on + strand, within Shew_0086 at 99.813 kb on - strand, within Shew_0086 at 99.814 kb on - strand, within Shew_0086 at 99.830 kb on + strand, within Shew_0086 at 100.019 kb on - strand, within Shew_0086 at 100.115 kb on + strand, within Shew_0086 at 100.145 kb on - strand, within Shew_0086 at 100.209 kb on + strand, within Shew_0086 at 100.228 kb on + strand, within Shew_0086 at 100.245 kb on + strand, within Shew_0086 at 100.253 kb on - strand, within Shew_0086 at 100.294 kb on + strand, within Shew_0086 at 100.326 kb on - strand, within Shew_0086 at 100.326 kb on - strand, within Shew_0086
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 96,658 + Shew_0083 0.60 -0.1 96,747 - Shew_0083 0.73 -0.4 96,763 - Shew_0083 0.75 -0.0 96,805 - Shew_0083 0.81 +0.2 97,217 + Shew_0084 0.62 +0.4 97,410 - -0.2 97,420 - -1.2 97,499 - +0.2 97,644 + Shew_0085 0.12 +0.4 97,644 + Shew_0085 0.12 -1.2 97,652 - Shew_0085 0.12 -0.4 97,833 - Shew_0085 0.22 -0.0 97,901 + Shew_0085 0.25 +0.4 98,288 + Shew_0085 0.46 +0.1 98,358 + Shew_0085 0.49 -0.0 98,398 - Shew_0085 0.51 +0.0 98,457 - Shew_0085 0.54 -0.4 98,459 + Shew_0085 0.55 -0.2 98,467 - Shew_0085 0.55 -0.1 98,510 + Shew_0085 0.57 -0.0 98,584 + Shew_0085 0.61 +0.0 98,628 + Shew_0085 0.63 -0.7 98,834 - Shew_0085 0.74 +0.0 99,029 + Shew_0085 0.84 -0.4 99,037 - Shew_0085 0.85 -0.4 99,117 + Shew_0085 0.89 -0.7 99,135 + Shew_0085 0.90 -0.8 99,179 + +0.4 99,179 - +0.3 99,179 + +0.0 99,210 + +0.2 99,293 - -0.2 99,352 - -0.4 99,352 - -0.2 99,352 - -0.1 99,363 + +0.2 99,365 + -0.4 99,417 + -0.1 99,640 + +2.1 99,757 + Shew_0086 0.10 +2.3 99,813 - Shew_0086 0.13 +0.8 99,814 - Shew_0086 0.14 +2.1 99,830 + Shew_0086 0.14 +0.9 100,019 - Shew_0086 0.26 +2.1 100,115 + Shew_0086 0.32 +2.0 100,145 - Shew_0086 0.34 +1.8 100,209 + Shew_0086 0.37 +1.8 100,228 + Shew_0086 0.39 +1.0 100,245 + Shew_0086 0.40 +1.8 100,253 - Shew_0086 0.40 +2.1 100,294 + Shew_0086 0.43 +2.0 100,326 - Shew_0086 0.45 +2.1 100,326 - Shew_0086 0.45 +1.7
Or see this region's nucleotide sequence