Strain Fitness in Shewanella loihica PV-4 around Shew_0073

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
85,894	+				-1.0
86,224	+		Shew_0072	0.57	+0.1
86,231	+		Shew_0072	0.59	-0.1
86,231	+		Shew_0072	0.59	-0.1
86,231	+		Shew_0072	0.59	-0.6
86,231	+		Shew_0072	0.59	-0.2
86,231	+		Shew_0072	0.59	-0.1
86,234	-		Shew_0072	0.59	-0.2
86,239	-		Shew_0072	0.60	+0.2
86,292	+		Shew_0072	0.70	+0.7
86,389	+		Shew_0072	0.89	-1.3
86,676	-				+0.3
86,823	-				-0.4
86,869	+				+0.7
86,882	-				-0.8
86,929	+				+0.1
86,929	+				+0.2
86,929	+				-0.6
86,937	-				-0.3
87,033	+		Shew_0073	0.16	-0.5
87,041	-		Shew_0073	0.17	-0.8
87,296	-		Shew_0073	0.35	+0.1
87,296	-		Shew_0073	0.35	-1.6
87,302	-		Shew_0073	0.36	+0.9
87,608	+		Shew_0073	0.59	+0.2
87,641	+		Shew_0073	0.61	+0.1
87,801	+		Shew_0073	0.73	-0.9
88,106	+				+0.1
88,114	-				-1.1
88,122	+				+0.0
88,167	+				-0.4
88,526	+		Shew_0074	0.42	+0.0
88,665	+		Shew_0074	0.65	-0.2
88,665	+		Shew_0074	0.65	-0.4
88,673	-		Shew_0074	0.66	-0.5
88,673	-		Shew_0074	0.66	-0.7
88,673	-		Shew_0074	0.66	-1.0
88,673	-		Shew_0074	0.66	-0.1
88,755	+		Shew_0074	0.79	+0.1
88,847	+				-0.6
89,081	-				-0.4
89,113	-				-0.6