Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0897 and Dshi_0898 are separated by 19 nucleotides Dshi_0898 and Dshi_0899 overlap by 4 nucleotides
Dshi_0897: Dshi_0897 - virulence protein SrfB (RefSeq), at 915,495 to 918,620
_0897
Dshi_0898: Dshi_0898 - hypothetical protein (RefSeq), at 918,640 to 921,318
_0898
Dshi_0899: Dshi_0899 - hypothetical protein (RefSeq), at 921,315 to 922,355
_0899
Position (kb) 918
919
920
921
922 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 917.660 kb on + strand, within Dshi_0897 at 917.708 kb on - strand, within Dshi_0897 at 917.845 kb on + strand, within Dshi_0897 at 918.348 kb on + strand at 918.455 kb on - strand at 918.551 kb on + strand at 918.573 kb on + strand at 918.686 kb on - strand at 919.069 kb on + strand, within Dshi_0898 at 919.134 kb on - strand, within Dshi_0898 at 919.176 kb on + strand, within Dshi_0898 at 919.176 kb on + strand, within Dshi_0898 at 919.226 kb on - strand, within Dshi_0898 at 919.319 kb on + strand, within Dshi_0898 at 919.390 kb on - strand, within Dshi_0898 at 919.421 kb on + strand, within Dshi_0898 at 919.525 kb on + strand, within Dshi_0898 at 919.545 kb on + strand, within Dshi_0898 at 919.788 kb on + strand, within Dshi_0898 at 919.793 kb on + strand, within Dshi_0898 at 919.867 kb on + strand, within Dshi_0898 at 919.907 kb on - strand, within Dshi_0898 at 919.910 kb on + strand, within Dshi_0898 at 920.181 kb on + strand, within Dshi_0898 at 920.204 kb on - strand, within Dshi_0898 at 920.255 kb on - strand, within Dshi_0898 at 920.325 kb on + strand, within Dshi_0898 at 920.360 kb on - strand, within Dshi_0898 at 920.467 kb on + strand, within Dshi_0898 at 920.475 kb on - strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.714 kb on + strand, within Dshi_0898 at 920.874 kb on - strand, within Dshi_0898 at 920.910 kb on + strand, within Dshi_0898 at 921.054 kb on - strand at 921.100 kb on + strand at 921.177 kb on + strand at 921.577 kb on - strand, within Dshi_0899 at 921.607 kb on + strand, within Dshi_0899 at 921.864 kb on - strand, within Dshi_0899 at 921.866 kb on + strand, within Dshi_0899 at 921.874 kb on - strand at 922.016 kb on + strand, within Dshi_0899 at 922.033 kb on + strand, within Dshi_0899 at 922.088 kb on + strand, within Dshi_0899 at 922.155 kb on + strand, within Dshi_0899 at 922.163 kb on - strand, within Dshi_0899 at 922.262 kb on + strand at 922.294 kb on + strand at 922.317 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 917,660 + Dshi_0897 0.69 +1.0 917,708 - Dshi_0897 0.71 +0.2 917,845 + Dshi_0897 0.75 +2.5 918,348 + +0.0 918,455 - +1.6 918,551 + -0.0 918,573 + +0.4 918,686 - +0.8 919,069 + Dshi_0898 0.16 +0.9 919,134 - Dshi_0898 0.18 +1.0 919,176 + Dshi_0898 0.20 +0.1 919,176 + Dshi_0898 0.20 +0.1 919,226 - Dshi_0898 0.22 +1.3 919,319 + Dshi_0898 0.25 +1.8 919,390 - Dshi_0898 0.28 +1.6 919,421 + Dshi_0898 0.29 +1.7 919,525 + Dshi_0898 0.33 +0.7 919,545 + Dshi_0898 0.34 +1.0 919,788 + Dshi_0898 0.43 +1.4 919,793 + Dshi_0898 0.43 +1.7 919,867 + Dshi_0898 0.46 +1.3 919,907 - Dshi_0898 0.47 +1.9 919,910 + Dshi_0898 0.47 +0.3 920,181 + Dshi_0898 0.58 +2.1 920,204 - Dshi_0898 0.58 -0.2 920,255 - Dshi_0898 0.60 +1.0 920,325 + Dshi_0898 0.63 +2.5 920,360 - Dshi_0898 0.64 +0.6 920,467 + Dshi_0898 0.68 +2.5 920,475 - Dshi_0898 0.68 -2.5 920,477 + Dshi_0898 0.69 +1.3 920,477 + Dshi_0898 0.69 +0.4 920,477 + Dshi_0898 0.69 +3.4 920,477 + Dshi_0898 0.69 +1.5 920,485 - Dshi_0898 0.69 +0.5 920,485 - Dshi_0898 0.69 -0.3 920,485 - Dshi_0898 0.69 +0.7 920,485 - Dshi_0898 0.69 -0.6 920,714 + Dshi_0898 0.77 +0.9 920,874 - Dshi_0898 0.83 +0.8 920,910 + Dshi_0898 0.85 +1.1 921,054 - +1.1 921,100 + +1.5 921,177 + +1.2 921,577 - Dshi_0899 0.25 +0.8 921,607 + Dshi_0899 0.28 +0.7 921,864 - Dshi_0899 0.53 +1.5 921,866 + Dshi_0899 0.53 +0.0 921,874 - +0.1 922,016 + Dshi_0899 0.67 +0.6 922,033 + Dshi_0899 0.69 +1.4 922,088 + Dshi_0899 0.74 +1.4 922,155 + Dshi_0899 0.81 +1.5 922,163 - Dshi_0899 0.81 +0.7 922,262 + +0.9 922,294 + +2.3 922,317 - +0.7
Or see this region's nucleotide sequence