Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0630 and Dshi_0631 are separated by 183 nucleotides Dshi_0631 and Dshi_0632 overlap by 23 nucleotides
Dshi_0630: Dshi_0630 - FAD dependent oxidoreductase (RefSeq), at 627,302 to 628,897
_0630
Dshi_0631: Dshi_0631 - transcriptional regulator, DeoR family (RefSeq), at 629,081 to 629,854
_0631
Dshi_0632: Dshi_0632 - acetate kinase (RefSeq), at 629,832 to 630,980
_0632
Position (kb) 629
630 Strain fitness (log2 ratio) -2
-1
0
1 at 629.053 kb on - strand at 629.085 kb on + strand at 629.209 kb on + strand, within Dshi_0631 at 629.332 kb on - strand, within Dshi_0631 at 629.334 kb on + strand, within Dshi_0631 at 629.337 kb on - strand, within Dshi_0631 at 629.382 kb on + strand, within Dshi_0631 at 629.608 kb on - strand, within Dshi_0631 at 629.671 kb on - strand at 629.685 kb on + strand, within Dshi_0631 at 629.685 kb on + strand, within Dshi_0631 at 629.750 kb on + strand, within Dshi_0631 at 629.788 kb on - strand at 629.795 kb on + strand at 629.838 kb on + strand at 630.151 kb on - strand, within Dshi_0632 at 630.199 kb on - strand, within Dshi_0632 at 630.221 kb on + strand, within Dshi_0632 at 630.236 kb on - strand, within Dshi_0632 at 630.363 kb on - strand, within Dshi_0632 at 630.418 kb on - strand, within Dshi_0632 at 630.531 kb on + strand, within Dshi_0632 at 630.724 kb on + strand, within Dshi_0632 at 630.724 kb on + strand, within Dshi_0632
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 629,053 - -1.0 629,085 + +0.3 629,209 + Dshi_0631 0.17 -0.1 629,332 - Dshi_0631 0.32 +0.3 629,334 + Dshi_0631 0.33 -0.8 629,337 - Dshi_0631 0.33 -0.5 629,382 + Dshi_0631 0.39 +0.2 629,608 - Dshi_0631 0.68 -1.1 629,671 - -0.3 629,685 + Dshi_0631 0.78 -1.0 629,685 + Dshi_0631 0.78 -1.1 629,750 + Dshi_0631 0.86 -0.4 629,788 - -0.3 629,795 + +0.7 629,838 + -1.8 630,151 - Dshi_0632 0.28 -1.3 630,199 - Dshi_0632 0.32 +0.6 630,221 + Dshi_0632 0.34 +0.1 630,236 - Dshi_0632 0.35 +0.1 630,363 - Dshi_0632 0.46 +0.6 630,418 - Dshi_0632 0.51 -0.3 630,531 + Dshi_0632 0.61 -0.1 630,724 + Dshi_0632 0.78 +0.1 630,724 + Dshi_0632 0.78 -0.3
Or see this region's nucleotide sequence