Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0101

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0100 and DVU0101 are separated by 110 nucleotidesDVU0101 and DVU0102 are separated by 187 nucleotides DVU0100: DVU0100 - TonB-dependent receptor (TIGR), at 131,347 to 133,296 DVU0100 DVU0101: DVU0101 - methlytransferase, UbiE/COQ5 family (TIGR), at 133,407 to 134,933 DVU0101 DVU0102: DVU0102 - cation ABC transporter, periplasmic binding protein (TIGR), at 135,121 to 136,113 DVU0102 Position (kb) 133 134 135Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 132.413 kb on + strand, within DVU0100at 132.618 kb on - strand, within DVU0100at 132.645 kb on - strand, within DVU0100at 132.645 kb on - strand, within DVU0100at 132.795 kb on + strand, within DVU0100at 132.836 kb on - strand, within DVU0100at 132.874 kb on + strand, within DVU0100at 132.889 kb on - strand, within DVU0100at 132.897 kb on + strand, within DVU0100at 132.905 kb on - strand, within DVU0100at 132.905 kb on - strand, within DVU0100at 132.953 kb on - strand, within DVU0100at 133.016 kb on + strand, within DVU0100at 133.050 kb on + strand, within DVU0100at 133.060 kb on + strand, within DVU0100at 133.077 kb on - strand, within DVU0100at 133.199 kb on - strandat 133.206 kb on + strandat 133.310 kb on + strandat 133.336 kb on + strandat 133.406 kb on + strandat 133.533 kb on - strandat 133.624 kb on - strand, within DVU0101at 133.640 kb on + strand, within DVU0101at 133.641 kb on - strand, within DVU0101at 133.696 kb on - strand, within DVU0101at 133.712 kb on + strand, within DVU0101at 133.759 kb on - strand, within DVU0101at 133.763 kb on + strand, within DVU0101at 133.797 kb on + strand, within DVU0101at 133.933 kb on + strand, within DVU0101at 133.959 kb on - strand, within DVU0101at 133.993 kb on + strand, within DVU0101at 134.001 kb on - strand, within DVU0101at 134.011 kb on + strand, within DVU0101at 134.019 kb on - strand, within DVU0101at 134.127 kb on + strand, within DVU0101at 134.127 kb on + strand, within DVU0101at 134.146 kb on + strand, within DVU0101at 134.162 kb on - strand, within DVU0101at 134.246 kb on - strand, within DVU0101at 134.352 kb on + strand, within DVU0101at 134.369 kb on + strand, within DVU0101at 134.409 kb on + strand, within DVU0101at 134.409 kb on + strand, within DVU0101at 134.409 kb on + strand, within DVU0101at 134.461 kb on - strand, within DVU0101at 134.499 kb on + strand, within DVU0101at 134.504 kb on + strand, within DVU0101at 134.530 kb on - strand, within DVU0101at 134.544 kb on + strand, within DVU0101at 134.544 kb on + strand, within DVU0101at 134.581 kb on + strand, within DVU0101at 134.581 kb on + strand, within DVU0101at 134.587 kb on - strand, within DVU0101at 134.649 kb on - strand, within DVU0101at 134.693 kb on + strand, within DVU0101at 134.737 kb on - strand, within DVU0101at 134.775 kb on - strand, within DVU0101at 134.800 kb on + strandat 134.899 kb on + strandat 134.924 kb on + strandat 134.934 kb on + strandat 134.953 kb on + strandat 134.966 kb on - strandat 135.003 kb on + strandat 135.003 kb on + strandat 135.003 kb on + strandat 135.093 kb on - strandat 135.095 kb on + strandat 135.095 kb on + strandat 135.095 kb on + strandat 135.097 kb on + strandat 135.180 kb on - strandat 135.208 kb on - strandat 135.245 kb on - strand, within DVU0102at 135.255 kb on + strand, within DVU0102at 135.272 kb on - strand, within DVU0102at 135.300 kb on - strand, within DVU0102at 135.340 kb on - strand, within DVU0102at 135.391 kb on + strand, within DVU0102at 135.391 kb on + strand, within DVU0102at 135.391 kb on + strand, within DVU0102at 135.399 kb on - strand, within DVU0102at 135.447 kb on + strand, within DVU0102at 135.553 kb on - strand, within DVU0102at 135.576 kb on + strand, within DVU0102at 135.576 kb on + strand, within DVU0102at 135.606 kb on - strand, within DVU0102at 135.633 kb on + strand, within DVU0102at 135.647 kb on + strand, within DVU0102at 135.710 kb on - strand, within DVU0102at 135.742 kb on - strand, within DVU0102at 135.742 kb on - strand, within DVU0102at 135.785 kb on - strand, within DVU0102at 135.827 kb on + strand, within DVU0102at 135.827 kb on + strand, within DVU0102at 135.866 kb on + strand, within DVU0102at 135.866 kb on + strand, within DVU0102at 135.910 kb on - strand, within DVU0102

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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132,413 + DVU0100 0.55 -0.7
132,618 - DVU0100 0.65 -0.4
132,645 - DVU0100 0.67 +0.3
132,645 - DVU0100 0.67 +0.1
132,795 + DVU0100 0.74 -0.2
132,836 - DVU0100 0.76 -3.6
132,874 + DVU0100 0.78 -0.0
132,889 - DVU0100 0.79 +0.0
132,897 + DVU0100 0.79 -0.6
132,905 - DVU0100 0.80 -3.8
132,905 - DVU0100 0.80 +0.5
132,953 - DVU0100 0.82 -2.7
133,016 + DVU0100 0.86 -0.2
133,050 + DVU0100 0.87 +0.8
133,060 + DVU0100 0.88 +0.0
133,077 - DVU0100 0.89 -0.7
133,199 - -0.3
133,206 + -0.5
133,310 + -0.0
133,336 + -0.4
133,406 + -3.2
133,533 - -1.5
133,624 - DVU0101 0.14 -1.7
133,640 + DVU0101 0.15 -0.0
133,641 - DVU0101 0.15 -0.6
133,696 - DVU0101 0.19 -0.3
133,712 + DVU0101 0.20 +0.1
133,759 - DVU0101 0.23 -0.5
133,763 + DVU0101 0.23 +0.3
133,797 + DVU0101 0.26 -0.1
133,933 + DVU0101 0.34 -0.1
133,959 - DVU0101 0.36 -0.6
133,993 + DVU0101 0.38 +0.1
134,001 - DVU0101 0.39 -0.2
134,011 + DVU0101 0.40 -0.4
134,019 - DVU0101 0.40 +0.7
134,127 + DVU0101 0.47 -0.0
134,127 + DVU0101 0.47 -0.5
134,146 + DVU0101 0.48 +1.2
134,162 - DVU0101 0.49 -0.3
134,246 - DVU0101 0.55 -0.1
134,352 + DVU0101 0.62 +0.2
134,369 + DVU0101 0.63 +1.5
134,409 + DVU0101 0.66 -0.0
134,409 + DVU0101 0.66 -0.1
134,409 + DVU0101 0.66 +2.1
134,461 - DVU0101 0.69 +0.1
134,499 + DVU0101 0.72 +0.1
134,504 + DVU0101 0.72 +1.1
134,530 - DVU0101 0.74 +0.4
134,544 + DVU0101 0.74 +0.2
134,544 + DVU0101 0.74 -0.2
134,581 + DVU0101 0.77 -1.4
134,581 + DVU0101 0.77 +0.7
134,587 - DVU0101 0.77 +0.8
134,649 - DVU0101 0.81 -0.3
134,693 + DVU0101 0.84 -2.7
134,737 - DVU0101 0.87 +0.0
134,775 - DVU0101 0.90 +0.8
134,800 + -0.8
134,899 + -0.7
134,924 + +0.1
134,934 + -0.5
134,953 + -0.5
134,966 - -0.4
135,003 + -3.6
135,003 + -3.1
135,003 + +0.0
135,093 - -2.6
135,095 + +0.1
135,095 + +0.2
135,095 + +0.7
135,097 + +0.2
135,180 - -0.7
135,208 - +0.1
135,245 - DVU0102 0.12 +0.2
135,255 + DVU0102 0.13 +0.1
135,272 - DVU0102 0.15 -0.1
135,300 - DVU0102 0.18 -3.5
135,340 - DVU0102 0.22 +0.1
135,391 + DVU0102 0.27 -0.5
135,391 + DVU0102 0.27 +0.0
135,391 + DVU0102 0.27 -0.4
135,399 - DVU0102 0.28 -0.9
135,447 + DVU0102 0.33 -0.1
135,553 - DVU0102 0.44 +0.3
135,576 + DVU0102 0.46 -1.7
135,576 + DVU0102 0.46 -3.5
135,606 - DVU0102 0.49 -4.0
135,633 + DVU0102 0.52 -0.1
135,647 + DVU0102 0.53 -0.7
135,710 - DVU0102 0.59 -0.5
135,742 - DVU0102 0.63 -0.3
135,742 - DVU0102 0.63 -2.7
135,785 - DVU0102 0.67 -0.2
135,827 + DVU0102 0.71 -5.5
135,827 + DVU0102 0.71 -0.3
135,866 + DVU0102 0.75 -0.6
135,866 + DVU0102 0.75 -0.0
135,910 - DVU0102 0.79 +0.4

Or see this region's nucleotide sequence