Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2777

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2775 and dsrC are separated by 354 nucleotidesdsrC and DVU2777 are separated by 196 nucleotidesDVU2777 and DVU2778 are separated by 65 nucleotidesDVU2778 and DVU2779 are separated by 382 nucleotides DVU2775: DVU2775 - hypothetical protein (TIGR), at 2,882,832 to 2,883,107 DVU2775 DVU2776: dsrC - dissimilatory sulfite reductase, gamma subunit (TIGR), at 2,883,462 to 2,883,779 dsrC DVU2777: DVU2777 - hypothetical protein (TIGR), at 2,883,976 to 2,884,242 DVU2777 DVU2778: DVU2778 - hypothetical protein (TIGR), at 2,884,308 to 2,884,580 DVU2778 DVU2779: DVU2779 - extracellular solute-binding protein, putative (TIGR), at 2,884,963 to 2,886,348 DVU2779 Position (kb) 2883 2884 2885Strain fitness (log2 ratio) -3 -2 -1 0 1at 2883.132 kb on - strandat 2883.156 kb on - strandat 2883.169 kb on - strandat 2883.256 kb on - strandat 2883.354 kb on - strandat 2883.354 kb on - strandat 2883.906 kb on - strandat 2884.054 kb on + strand, within DVU2777at 2884.064 kb on + strand, within DVU2777at 2884.064 kb on + strand, within DVU2777at 2884.064 kb on + strand, within DVU2777at 2884.064 kb on + strand, within DVU2777at 2884.069 kb on + strand, within DVU2777at 2884.072 kb on - strand, within DVU2777at 2884.072 kb on - strand, within DVU2777at 2884.072 kb on - strand, within DVU2777at 2884.094 kb on + strand, within DVU2777at 2884.101 kb on + strand, within DVU2777at 2884.220 kb on - strandat 2884.259 kb on - strandat 2884.306 kb on + strandat 2884.306 kb on + strandat 2884.326 kb on - strandat 2885.011 kb on - strandat 2885.159 kb on - strand, within DVU2779at 2885.183 kb on + strand, within DVU2779at 2885.227 kb on + strand, within DVU2779

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,883,132 - +0.4
2,883,156 - -0.3
2,883,169 - +0.8
2,883,256 - +1.1
2,883,354 - +0.5
2,883,354 - -1.5
2,883,906 - -0.3
2,884,054 + DVU2777 0.29 -0.2
2,884,064 + DVU2777 0.33 +0.1
2,884,064 + DVU2777 0.33 +0.2
2,884,064 + DVU2777 0.33 -0.1
2,884,064 + DVU2777 0.33 -0.3
2,884,069 + DVU2777 0.35 +0.2
2,884,072 - DVU2777 0.36 +0.5
2,884,072 - DVU2777 0.36 +0.3
2,884,072 - DVU2777 0.36 -0.1
2,884,094 + DVU2777 0.44 +0.1
2,884,101 + DVU2777 0.47 +1.0
2,884,220 - +0.1
2,884,259 - -3.2
2,884,306 + -0.5
2,884,306 + +0.4
2,884,326 - -3.5
2,885,011 - -0.9
2,885,159 - DVU2779 0.14 +0.2
2,885,183 + DVU2779 0.16 +0.6
2,885,227 + DVU2779 0.19 -0.8

Or see this region's nucleotide sequence