Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1973

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1971 and DVU1972 are separated by 348 nucleotidesDVU1972 and DVU1973 overlap by 2 nucleotidesDVU1973 and DVU1974 overlap by 8 nucleotides DVU1971: DVU1971 - conserved domain protein (TIGR), at 2,045,894 to 2,046,457 DVU1971 DVU1972: DVU1972 - hypothetical protein (TIGR), at 2,046,806 to 2,047,000 DVU1972 DVU1973: DVU1973 - rhodanese-like domain protein (TIGR), at 2,046,999 to 2,047,847 DVU1973 DVU1974: DVU1974 - pyridine nucleotide-disulfide oxidoreductase (TIGR), at 2,047,840 to 2,048,943 DVU1974 Position (kb) 2046 2047 2048Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2046.140 kb on + strand, within DVU1971at 2046.148 kb on - strand, within DVU1971at 2046.148 kb on - strand, within DVU1971at 2046.199 kb on + strand, within DVU1971at 2046.240 kb on + strand, within DVU1971at 2046.240 kb on + strand, within DVU1971at 2046.248 kb on - strand, within DVU1971at 2046.354 kb on + strand, within DVU1971at 2046.389 kb on + strand, within DVU1971at 2046.428 kb on - strandat 2046.428 kb on - strandat 2046.437 kb on + strandat 2046.463 kb on + strandat 2046.463 kb on + strandat 2046.491 kb on + strandat 2046.499 kb on - strandat 2046.502 kb on + strandat 2046.516 kb on + strandat 2046.556 kb on - strandat 2046.649 kb on - strandat 2046.872 kb on + strand, within DVU1972at 2046.880 kb on - strand, within DVU1972at 2046.926 kb on + strand, within DVU1972at 2046.985 kb on + strandat 2046.993 kb on - strandat 2047.154 kb on - strand, within DVU1973at 2047.187 kb on - strand, within DVU1973at 2047.214 kb on - strand, within DVU1973at 2047.403 kb on - strand, within DVU1973at 2047.429 kb on + strand, within DVU1973at 2047.451 kb on - strand, within DVU1973at 2047.460 kb on - strand, within DVU1973at 2047.592 kb on - strand, within DVU1973at 2047.619 kb on + strand, within DVU1973at 2047.620 kb on - strand, within DVU1973at 2047.663 kb on - strand, within DVU1973at 2047.698 kb on + strand, within DVU1973at 2047.707 kb on - strand, within DVU1973at 2047.748 kb on - strand, within DVU1973at 2047.891 kb on - strandat 2047.894 kb on + strandat 2047.945 kb on + strandat 2047.960 kb on - strand, within DVU1974at 2047.995 kb on + strand, within DVU1974at 2048.356 kb on + strand, within DVU1974at 2048.395 kb on - strand, within DVU1974at 2048.518 kb on + strand, within DVU1974at 2048.615 kb on - strand, within DVU1974at 2048.632 kb on + strand, within DVU1974at 2048.642 kb on + strand, within DVU1974at 2048.645 kb on - strand, within DVU1974at 2048.647 kb on - strand, within DVU1974at 2048.766 kb on + strand, within DVU1974at 2048.774 kb on - strand, within DVU1974at 2048.845 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,046,140 + DVU1971 0.44 +0.1
2,046,148 - DVU1971 0.45 +0.5
2,046,148 - DVU1971 0.45 -0.0
2,046,199 + DVU1971 0.54 -0.8
2,046,240 + DVU1971 0.61 -0.4
2,046,240 + DVU1971 0.61 -0.6
2,046,248 - DVU1971 0.63 +0.9
2,046,354 + DVU1971 0.82 -0.3
2,046,389 + DVU1971 0.88 -0.1
2,046,428 - -2.2
2,046,428 - -0.7
2,046,437 + -0.8
2,046,463 + -0.3
2,046,463 + -0.5
2,046,491 + -0.6
2,046,499 - +0.1
2,046,502 + -2.9
2,046,516 + -0.1
2,046,556 - -2.8
2,046,649 - -0.2
2,046,872 + DVU1972 0.34 -2.5
2,046,880 - DVU1972 0.38 -2.6
2,046,926 + DVU1972 0.62 -2.2
2,046,985 + -0.2
2,046,993 - -0.2
2,047,154 - DVU1973 0.18 -1.6
2,047,187 - DVU1973 0.22 -4.1
2,047,214 - DVU1973 0.25 -0.1
2,047,403 - DVU1973 0.48 +0.2
2,047,429 + DVU1973 0.51 -0.2
2,047,451 - DVU1973 0.53 -1.3
2,047,460 - DVU1973 0.54 -0.2
2,047,592 - DVU1973 0.70 +0.5
2,047,619 + DVU1973 0.73 +0.7
2,047,620 - DVU1973 0.73 -3.3
2,047,663 - DVU1973 0.78 -0.4
2,047,698 + DVU1973 0.82 -0.4
2,047,707 - DVU1973 0.83 -0.1
2,047,748 - DVU1973 0.88 -0.3
2,047,891 - -0.1
2,047,894 + -0.4
2,047,945 + +0.1
2,047,960 - DVU1974 0.11 -2.9
2,047,995 + DVU1974 0.14 -0.0
2,048,356 + DVU1974 0.47 +0.6
2,048,395 - DVU1974 0.50 -0.2
2,048,518 + DVU1974 0.61 -0.1
2,048,615 - DVU1974 0.70 +0.3
2,048,632 + DVU1974 0.72 +0.8
2,048,642 + DVU1974 0.73 -0.1
2,048,645 - DVU1974 0.73 +0.2
2,048,647 - DVU1974 0.73 +0.0
2,048,766 + DVU1974 0.84 -0.2
2,048,774 - DVU1974 0.85 +0.2
2,048,845 + -2.8

Or see this region's nucleotide sequence