Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1878

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1877 and ltaE are separated by 198 nucleotidesltaE and DVU1879 are separated by 11 nucleotides DVU1877: DVU1877 - polysaccharide deacetylase family protein (TIGR), at 1,944,936 to 1,946,036 DVU1877 DVU1878: ltaE - threonine aldolase, low-specificity (TIGR), at 1,946,235 to 1,947,257 ltaE DVU1879: DVU1879 - glycosyl transferase, group 1 family protein (TIGR), at 1,947,269 to 1,948,369 DVU1879 Position (kb) 1946 1947 1948Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1946.049 kb on + strandat 1946.094 kb on - strandat 1946.134 kb on + strandat 1946.134 kb on + strandat 1946.180 kb on - strandat 1946.265 kb on + strandat 1946.316 kb on + strandat 1946.428 kb on + strand, within ltaEat 1946.455 kb on + strand, within ltaEat 1946.455 kb on + strand, within ltaEat 1946.463 kb on - strand, within ltaEat 1946.463 kb on - strand, within ltaEat 1946.473 kb on - strand, within ltaEat 1946.569 kb on - strand, within ltaEat 1946.618 kb on + strand, within ltaEat 1946.627 kb on - strand, within ltaEat 1946.731 kb on + strand, within ltaEat 1946.738 kb on + strand, within ltaEat 1946.738 kb on + strand, within ltaEat 1946.746 kb on - strand, within ltaEat 1946.803 kb on - strand, within ltaEat 1946.817 kb on - strand, within ltaEat 1946.819 kb on - strand, within ltaEat 1946.820 kb on - strand, within ltaEat 1946.828 kb on + strand, within ltaEat 1946.843 kb on - strand, within ltaEat 1946.876 kb on - strand, within ltaEat 1947.005 kb on - strand, within ltaEat 1947.028 kb on + strand, within ltaEat 1947.160 kb on + strandat 1947.166 kb on + strandat 1947.168 kb on - strandat 1947.174 kb on - strandat 1947.215 kb on + strandat 1947.219 kb on + strandat 1947.223 kb on - strandat 1947.256 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,946,049 + -0.0
1,946,094 - -0.2
1,946,134 + -0.5
1,946,134 + +0.6
1,946,180 - -0.4
1,946,265 + -2.7
1,946,316 + +1.8
1,946,428 + ltaE DVU1878 0.19 -0.9
1,946,455 + ltaE DVU1878 0.22 +0.3
1,946,455 + ltaE DVU1878 0.22 +0.1
1,946,463 - ltaE DVU1878 0.22 -0.2
1,946,463 - ltaE DVU1878 0.22 -0.5
1,946,473 - ltaE DVU1878 0.23 +0.2
1,946,569 - ltaE DVU1878 0.33 -2.8
1,946,618 + ltaE DVU1878 0.37 -3.2
1,946,627 - ltaE DVU1878 0.38 +0.4
1,946,731 + ltaE DVU1878 0.48 -2.9
1,946,738 + ltaE DVU1878 0.49 -3.0
1,946,738 + ltaE DVU1878 0.49 -0.2
1,946,746 - ltaE DVU1878 0.50 -0.2
1,946,803 - ltaE DVU1878 0.56 -0.6
1,946,817 - ltaE DVU1878 0.57 -0.0
1,946,819 - ltaE DVU1878 0.57 -3.1
1,946,820 - ltaE DVU1878 0.57 +1.0
1,946,828 + ltaE DVU1878 0.58 -0.4
1,946,843 - ltaE DVU1878 0.59 -0.7
1,946,876 - ltaE DVU1878 0.63 -2.2
1,947,005 - ltaE DVU1878 0.75 -0.2
1,947,028 + ltaE DVU1878 0.78 +0.2
1,947,160 + -3.1
1,947,166 + -0.8
1,947,168 - +0.3
1,947,174 - -0.2
1,947,215 + +0.5
1,947,219 + -0.2
1,947,223 - +0.3
1,947,256 + +0.3

Or see this region's nucleotide sequence