Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1747

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1746 and DVU1747 are separated by 40 nucleotidesDVU1747 and DVU1748 overlap by 20 nucleotides DVU1746: DVU1746 - C-5 cytosine-specific DNA methylase family protein (TIGR), at 1,812,266 to 1,813,375 DVU1746 DVU1747: DVU1747 - ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein (TIGR), at 1,813,416 to 1,816,361 DVU1747 DVU1748: DVU1748 - conserved hypothetical protein (TIGR), at 1,816,342 to 1,818,114 DVU1748 Position (kb) 1813 1814 1815 1816 1817Strain fitness (log2 ratio) -3 -2 -1 0 1at 1812.486 kb on + strand, within DVU1746at 1812.579 kb on - strand, within DVU1746at 1812.749 kb on - strand, within DVU1746at 1812.840 kb on - strand, within DVU1746at 1812.927 kb on - strand, within DVU1746at 1813.207 kb on + strand, within DVU1746at 1813.207 kb on + strand, within DVU1746at 1813.288 kb on - strandat 1813.297 kb on + strandat 1813.517 kb on - strandat 1813.621 kb on + strandat 1813.651 kb on - strandat 1813.655 kb on + strandat 1813.655 kb on + strandat 1813.749 kb on + strand, within DVU1747at 1813.763 kb on + strand, within DVU1747at 1813.780 kb on + strand, within DVU1747at 1813.804 kb on - strand, within DVU1747at 1813.804 kb on - strand, within DVU1747at 1813.804 kb on - strand, within DVU1747at 1813.804 kb on - strand, within DVU1747at 1813.804 kb on - strand, within DVU1747at 1813.805 kb on - strand, within DVU1747at 1813.845 kb on - strand, within DVU1747at 1813.987 kb on - strand, within DVU1747at 1813.994 kb on + strand, within DVU1747at 1814.052 kb on - strand, within DVU1747at 1814.066 kb on - strand, within DVU1747at 1814.068 kb on + strand, within DVU1747at 1814.068 kb on + strand, within DVU1747at 1814.068 kb on + strand, within DVU1747at 1814.068 kb on + strand, within DVU1747at 1814.135 kb on + strand, within DVU1747at 1814.143 kb on - strand, within DVU1747at 1814.709 kb on + strand, within DVU1747at 1814.727 kb on - strand, within DVU1747at 1814.782 kb on + strand, within DVU1747at 1814.802 kb on - strand, within DVU1747at 1814.807 kb on + strand, within DVU1747at 1814.937 kb on - strand, within DVU1747at 1815.079 kb on - strand, within DVU1747at 1815.119 kb on - strand, within DVU1747at 1815.229 kb on - strand, within DVU1747at 1815.229 kb on - strand, within DVU1747at 1815.240 kb on + strand, within DVU1747at 1815.254 kb on - strand, within DVU1747at 1815.262 kb on + strand, within DVU1747at 1815.293 kb on + strand, within DVU1747at 1815.293 kb on + strand, within DVU1747at 1815.301 kb on - strand, within DVU1747at 1815.403 kb on + strand, within DVU1747at 1815.411 kb on - strand, within DVU1747at 1815.411 kb on - strand, within DVU1747at 1815.420 kb on - strand, within DVU1747at 1815.438 kb on - strand, within DVU1747at 1815.629 kb on + strand, within DVU1747at 1816.222 kb on + strandat 1816.230 kb on - strandat 1816.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,812,486 + DVU1746 0.20 -0.3
1,812,579 - DVU1746 0.28 -0.9
1,812,749 - DVU1746 0.44 -0.2
1,812,840 - DVU1746 0.52 -0.4
1,812,927 - DVU1746 0.60 -0.4
1,813,207 + DVU1746 0.85 +0.3
1,813,207 + DVU1746 0.85 -0.4
1,813,288 - -0.2
1,813,297 + -0.5
1,813,517 - -0.5
1,813,621 + -0.6
1,813,651 - -0.4
1,813,655 + -0.8
1,813,655 + -0.5
1,813,749 + DVU1747 0.11 +1.1
1,813,763 + DVU1747 0.12 -2.6
1,813,780 + DVU1747 0.12 -3.1
1,813,804 - DVU1747 0.13 -0.4
1,813,804 - DVU1747 0.13 +0.1
1,813,804 - DVU1747 0.13 -0.5
1,813,804 - DVU1747 0.13 -1.6
1,813,804 - DVU1747 0.13 +0.1
1,813,805 - DVU1747 0.13 +0.8
1,813,845 - DVU1747 0.15 -2.1
1,813,987 - DVU1747 0.19 -0.6
1,813,994 + DVU1747 0.20 +0.1
1,814,052 - DVU1747 0.22 -1.9
1,814,066 - DVU1747 0.22 -0.6
1,814,068 + DVU1747 0.22 -0.1
1,814,068 + DVU1747 0.22 -0.2
1,814,068 + DVU1747 0.22 -2.6
1,814,068 + DVU1747 0.22 -0.9
1,814,135 + DVU1747 0.24 -2.8
1,814,143 - DVU1747 0.25 -2.6
1,814,709 + DVU1747 0.44 -1.2
1,814,727 - DVU1747 0.45 -0.1
1,814,782 + DVU1747 0.46 -0.4
1,814,802 - DVU1747 0.47 -0.4
1,814,807 + DVU1747 0.47 -0.1
1,814,937 - DVU1747 0.52 +0.8
1,815,079 - DVU1747 0.56 -0.1
1,815,119 - DVU1747 0.58 -0.5
1,815,229 - DVU1747 0.62 -2.9
1,815,229 - DVU1747 0.62 +0.3
1,815,240 + DVU1747 0.62 -2.9
1,815,254 - DVU1747 0.62 -0.4
1,815,262 + DVU1747 0.63 -3.1
1,815,293 + DVU1747 0.64 +0.5
1,815,293 + DVU1747 0.64 -0.4
1,815,301 - DVU1747 0.64 -0.4
1,815,403 + DVU1747 0.67 -0.7
1,815,411 - DVU1747 0.68 -1.2
1,815,411 - DVU1747 0.68 -1.3
1,815,420 - DVU1747 0.68 -0.6
1,815,438 - DVU1747 0.69 -0.0
1,815,629 + DVU1747 0.75 -2.0
1,816,222 + -0.7
1,816,230 - -0.1
1,816,295 - -0.5

Or see this region's nucleotide sequence