Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0966

Experiment: L-Malic Acid (C) with ammonium chloride; high light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic Acid (C) with ammonium chloride; high light
1,148,979	+				-0.1
1,149,035	-				-0.1
1,149,035	-				-0.1
1,149,180	+				-0.1
1,149,181	-				-2.1
1,149,181	-				-0.1
1,149,221	-				-0.1
1,149,221	-				-0.1
1,149,221	-				-0.1
1,149,350	+		Rru_A0965	0.31	-0.1
1,149,351	-		Rru_A0965	0.31	-0.1
1,149,351	-		Rru_A0965	0.31	-2.1
1,149,351	-		Rru_A0965	0.31	-0.1
1,149,351	-		Rru_A0965	0.31	-0.1
1,149,513	-		Rru_A0965	0.63	-1.0
1,149,629	+		Rru_A0965	0.87	-2.3
1,149,629	+		Rru_A0965	0.87	-2.4
1,149,763	-				-0.1
1,149,763	-				-0.1
1,149,767	+				-0.1
1,149,768	-				-0.1
1,149,768	-				-1.1
1,149,832	+				-0.1
1,149,832	+				-0.1
1,149,882	+				-0.6
1,149,882	+				-0.1
1,149,882	+				-0.1
1,149,882	+				-0.7
1,149,883	-				-0.1
1,149,883	-				-0.1
1,149,883	-				-0.5
1,149,883	-				-0.1
1,149,883	-				-0.5
1,149,883	-				-0.1
1,149,884	+				-0.1
1,149,894	-				-1.1
1,150,073	+		Rru_A0966	0.13	-0.1
1,150,073	+		Rru_A0966	0.13	-0.1
1,150,074	-		Rru_A0966	0.13	-1.8
1,150,074	-		Rru_A0966	0.13	-3.0
1,150,215	+		Rru_A0966	0.19	-0.2
1,150,215	+		Rru_A0966	0.19	-0.2
1,150,299	+		Rru_A0966	0.22	-0.2
1,150,299	+		Rru_A0966	0.22	-1.7
1,150,299	+		Rru_A0966	0.22	-0.2
1,150,300	-		Rru_A0966	0.22	-1.7
1,150,300	-		Rru_A0966	0.22	-0.2
1,150,300	-		Rru_A0966	0.22	-0.2
1,150,300	-		Rru_A0966	0.22	-1.1
1,150,300	-		Rru_A0966	0.22	-1.6
1,150,419	+		Rru_A0966	0.27	-0.2
1,150,419	+		Rru_A0966	0.27	-0.6
1,150,419	+		Rru_A0966	0.27	-0.5
1,150,419	+		Rru_A0966	0.27	-3.4
1,150,420	-		Rru_A0966	0.27	-0.2
1,150,420	-		Rru_A0966	0.27	-0.2
1,150,420	-		Rru_A0966	0.27	-0.2
1,150,420	-		Rru_A0966	0.27	-1.8
1,150,420	-		Rru_A0966	0.27	-0.2
1,150,421	+		Rru_A0966	0.27	-0.2
1,150,422	-		Rru_A0966	0.27	-1.7
1,150,452	+		Rru_A0966	0.28	-0.2
1,150,452	+		Rru_A0966	0.28	-0.2
1,150,452	+		Rru_A0966	0.28	-0.2
1,150,452	+		Rru_A0966	0.28	-0.2
1,150,453	-		Rru_A0966	0.28	+0.6
1,150,453	-		Rru_A0966	0.28	-0.2
1,150,453	-		Rru_A0966	0.28	-1.5
1,150,453	-		Rru_A0966	0.28	-0.2
1,150,453	-		Rru_A0966	0.28	-0.2
1,150,453	-		Rru_A0966	0.28	-0.2
1,150,584	+		Rru_A0966	0.34	-0.2
1,150,584	+		Rru_A0966	0.34	-0.2
1,150,584	+		Rru_A0966	0.34	-0.2
1,150,585	-		Rru_A0966	0.34	-1.4
1,150,585	-		Rru_A0966	0.34	-0.2
1,150,585	-		Rru_A0966	0.34	-0.2
1,150,585	-		Rru_A0966	0.34	-0.2
1,150,585	-		Rru_A0966	0.34	-0.2
1,150,590	+		Rru_A0966	0.34	-0.2
1,150,590	+		Rru_A0966	0.34	-0.2
1,150,782	+		Rru_A0966	0.42	-0.2
1,150,783	-		Rru_A0966	0.42	-2.9
1,150,815	+		Rru_A0966	0.43	-1.5
1,150,815	+		Rru_A0966	0.43	-0.2
1,150,816	-		Rru_A0966	0.43	-0.2
1,150,816	-		Rru_A0966	0.43	-0.2
1,150,816	-		Rru_A0966	0.43	-0.2
1,150,816	-		Rru_A0966	0.43	-0.2
1,150,816	-		Rru_A0966	0.43	-0.2
1,150,816	-		Rru_A0966	0.43	-3.5
1,150,816	-		Rru_A0966	0.43	-0.7
1,150,819	+		Rru_A0966	0.44	-3.3
1,150,819	+		Rru_A0966	0.44	-0.2
1,150,819	+		Rru_A0966	0.44	-0.2
1,150,819	+		Rru_A0966	0.44	-0.2
1,150,819	+		Rru_A0966	0.44	-0.2
1,150,820	-		Rru_A0966	0.44	-0.2
1,150,820	-		Rru_A0966	0.44	-0.2
1,150,820	-		Rru_A0966	0.44	-0.2
1,150,820	-		Rru_A0966	0.44	-2.1
1,150,822	-		Rru_A0966	0.44	+0.3
1,150,822	-		Rru_A0966	0.44	-1.4
1,150,822	-		Rru_A0966	0.44	-2.2
1,150,845	+		Rru_A0966	0.45	-0.2
1,150,886	+		Rru_A0966	0.46	-0.2
1,150,892	+		Rru_A0966	0.47	-0.2
1,150,941	+		Rru_A0966	0.49	-2.3
1,150,941	+		Rru_A0966	0.49	-0.2
1,150,942	-		Rru_A0966	0.49	-3.0
1,150,942	-		Rru_A0966	0.49	-0.2
1,151,040	+		Rru_A0966	0.53	-1.2
1,151,065	-		Rru_A0966	0.54	-0.2
1,151,065	-		Rru_A0966	0.54	-0.2
1,151,065	-		Rru_A0966	0.54	-0.2
1,151,065	-		Rru_A0966	0.54	-1.2
1,151,181	+		Rru_A0966	0.59	-0.2
1,151,181	+		Rru_A0966	0.59	-0.2
1,151,181	+		Rru_A0966	0.59	-0.2
1,151,181	+		Rru_A0966	0.59	-2.0
1,151,182	-		Rru_A0966	0.59	-0.2
1,151,190	+		Rru_A0966	0.59	-1.4
1,151,190	+		Rru_A0966	0.59	-0.8
1,151,190	+		Rru_A0966	0.59	-1.1
1,151,191	-		Rru_A0966	0.59	-0.2
1,151,191	-		Rru_A0966	0.59	-0.4
1,151,417	+		Rru_A0966	0.68	-0.2
1,151,417	+		Rru_A0966	0.68	-1.0
1,151,418	-		Rru_A0966	0.68	-1.7
1,151,418	-		Rru_A0966	0.68	-0.5
1,151,418	-		Rru_A0966	0.68	-2.3
1,151,418	-		Rru_A0966	0.68	-0.2
1,151,442	+		Rru_A0966	0.69	-2.2
1,151,442	+		Rru_A0966	0.69	-1.2
1,151,442	+		Rru_A0966	0.69	-0.2
1,151,442	+		Rru_A0966	0.69	-0.4
1,151,443	-		Rru_A0966	0.69	-1.2
1,151,443	-		Rru_A0966	0.69	-2.3
1,151,443	-		Rru_A0966	0.69	-0.2
1,151,443	-		Rru_A0966	0.69	-0.2
1,151,634	+		Rru_A0966	0.77	-0.2
1,151,634	+		Rru_A0966	0.77	-0.2
1,151,635	-		Rru_A0966	0.77	-1.2
1,151,635	-		Rru_A0966	0.77	-1.2
1,151,635	-		Rru_A0966	0.77	-0.2
1,151,635	-		Rru_A0966	0.77	-0.2
1,151,694	+		Rru_A0966	0.80	-0.2
1,151,695	-		Rru_A0966	0.80	-0.2
1,151,695	-		Rru_A0966	0.80	-0.2
1,151,716	-		Rru_A0966	0.81	-0.2
1,151,767	+		Rru_A0966	0.83	-0.2
1,151,768	-		Rru_A0966	0.83	-0.2
1,151,895	+		Rru_A0966	0.88	-0.2
1,151,895	+		Rru_A0966	0.88	-0.2
1,151,937	+		Rru_A0966	0.90	-0.2
1,151,937	+		Rru_A0966	0.90	-0.2
1,151,938	-				-0.2
1,151,938	-				-0.2
1,152,005	+				-2.3
1,152,177	+				-0.2
1,152,177	+				-1.7
1,152,215	+				-0.5
1,152,215	+				-0.2
1,152,215	+				-0.2
1,152,215	+				-0.2
1,152,215	+				-0.2
1,152,215	+				-1.8
1,152,215	+				-1.9
1,152,216	-				-0.2
1,152,216	-				-0.2
1,152,216	-				-0.2
1,152,216	-				-0.2
1,152,216	-				-0.2
1,152,216	-				-2.2
1,152,216	-				-0.2
1,152,216	-				-0.2
1,152,216	-				-0.2
1,152,216	-				-1.7
1,152,219	+				-0.2
1,152,220	-				-0.2
1,152,220	-				-1.2
1,152,220	-				-1.9
1,152,220	-				-0.2
1,152,220	-				-1.2
1,152,220	-				-1.4
1,152,220	-				-2.6
1,152,231	+				-0.9
1,152,231	+				-0.2
1,152,733	-		Rru_A0967	0.65	-0.8
1,153,098	-				-0.1