Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0784 and Rru_A0785 are separated by 334 nucleotides Rru_A0785 and Rru_A0786 are separated by 176 nucleotides
Rru_A0784: Rru_A0784 - O-acetylhomoserine/O-acetylserine sulfhydrylase (NCBI), at 935,651 to 936,979
_A0784
Rru_A0785: Rru_A0785 - Transcriptional Regulator, LysR family (NCBI), at 937,314 to 938,249
_A0785
Rru_A0786: Rru_A0786 - Cystathionine gamma-synthase (NCBI), at 938,426 to 939,598
_A0786
Position (kb) 937
938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 936.422 kb on + strand, within Rru_A0784 at 936.422 kb on + strand, within Rru_A0784 at 936.473 kb on + strand, within Rru_A0784 at 936.473 kb on + strand, within Rru_A0784 at 936.473 kb on + strand, within Rru_A0784 at 936.473 kb on + strand, within Rru_A0784 at 936.474 kb on - strand, within Rru_A0784 at 936.474 kb on - strand, within Rru_A0784 at 936.474 kb on - strand, within Rru_A0784 at 936.474 kb on - strand, within Rru_A0784 at 936.475 kb on + strand, within Rru_A0784 at 936.475 kb on + strand, within Rru_A0784 at 936.476 kb on - strand, within Rru_A0784 at 936.654 kb on - strand, within Rru_A0784 at 936.654 kb on - strand, within Rru_A0784 at 936.698 kb on + strand, within Rru_A0784 at 936.698 kb on + strand, within Rru_A0784 at 936.699 kb on - strand, within Rru_A0784 at 936.699 kb on - strand, within Rru_A0784 at 936.791 kb on + strand, within Rru_A0784 at 936.791 kb on + strand, within Rru_A0784 at 936.792 kb on - strand, within Rru_A0784 at 936.792 kb on - strand, within Rru_A0784 at 936.902 kb on + strand at 936.902 kb on + strand at 936.902 kb on + strand at 936.902 kb on + strand at 936.903 kb on - strand at 936.903 kb on - strand at 936.903 kb on - strand at 937.210 kb on + strand at 937.211 kb on - strand at 937.212 kb on + strand at 937.212 kb on + strand at 937.331 kb on + strand at 937.331 kb on + strand at 937.331 kb on + strand at 937.332 kb on - strand at 937.433 kb on - strand, within Rru_A0785 at 937.433 kb on - strand, within Rru_A0785 at 937.481 kb on + strand, within Rru_A0785 at 937.867 kb on + strand, within Rru_A0785 at 937.868 kb on - strand, within Rru_A0785 at 938.164 kb on - strand at 938.264 kb on + strand at 938.265 kb on - strand at 938.305 kb on - strand at 938.305 kb on - strand at 938.315 kb on + strand at 938.316 kb on - strand at 938.748 kb on + strand, within Rru_A0786 at 938.982 kb on + strand, within Rru_A0786 at 938.982 kb on + strand, within Rru_A0786 at 938.983 kb on - strand, within Rru_A0786 at 938.983 kb on - strand, within Rru_A0786 at 938.983 kb on - strand, within Rru_A0786 at 938.983 kb on - strand, within Rru_A0786 at 939.216 kb on + strand, within Rru_A0786 at 939.216 kb on + strand, within Rru_A0786 at 939.216 kb on + strand, within Rru_A0786 at 939.216 kb on + strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 936,422 + Rru_A0784 0.58 +0.5 936,422 + Rru_A0784 0.58 -0.1 936,473 + Rru_A0784 0.62 -0.1 936,473 + Rru_A0784 0.62 -0.1 936,473 + Rru_A0784 0.62 -0.1 936,473 + Rru_A0784 0.62 -0.1 936,474 - Rru_A0784 0.62 -0.1 936,474 - Rru_A0784 0.62 -1.9 936,474 - Rru_A0784 0.62 -0.1 936,474 - Rru_A0784 0.62 +0.2 936,475 + Rru_A0784 0.62 -0.1 936,475 + Rru_A0784 0.62 -2.4 936,476 - Rru_A0784 0.62 -1.6 936,654 - Rru_A0784 0.75 -0.1 936,654 - Rru_A0784 0.75 -1.3 936,698 + Rru_A0784 0.79 -0.1 936,698 + Rru_A0784 0.79 -0.1 936,699 - Rru_A0784 0.79 -0.1 936,699 - Rru_A0784 0.79 -2.3 936,791 + Rru_A0784 0.86 -0.1 936,791 + Rru_A0784 0.86 -0.3 936,792 - Rru_A0784 0.86 +0.0 936,792 - Rru_A0784 0.86 -0.1 936,902 + -3.1 936,902 + -0.1 936,902 + -0.1 936,902 + -0.1 936,903 - -0.1 936,903 - -0.1 936,903 - -0.1 937,210 + -0.1 937,211 - -0.1 937,212 + -0.1 937,212 + -0.1 937,331 + -1.9 937,331 + -0.1 937,331 + -0.1 937,332 - -1.3 937,433 - Rru_A0785 0.13 -0.1 937,433 - Rru_A0785 0.13 -1.1 937,481 + Rru_A0785 0.18 -1.8 937,867 + Rru_A0785 0.59 -0.1 937,868 - Rru_A0785 0.59 -0.1 938,164 - -0.1 938,264 + -0.1 938,265 - -0.1 938,305 - -0.1 938,305 - -0.1 938,315 + -0.1 938,316 - -1.8 938,748 + Rru_A0786 0.27 -0.1 938,982 + Rru_A0786 0.47 -0.7 938,982 + Rru_A0786 0.47 -0.6 938,983 - Rru_A0786 0.47 -0.1 938,983 - Rru_A0786 0.47 -0.1 938,983 - Rru_A0786 0.47 -1.3 938,983 - Rru_A0786 0.47 -0.1 939,216 + Rru_A0786 0.67 -0.1 939,216 + Rru_A0786 0.67 -0.1 939,216 + Rru_A0786 0.67 -0.1 939,216 + Rru_A0786 0.67 -0.1 939,217 - Rru_A0786 0.67 -1.3 939,217 - Rru_A0786 0.67 -0.1 939,217 - Rru_A0786 0.67 -0.1 939,217 - Rru_A0786 0.67 +0.4 939,217 - Rru_A0786 0.67 -2.3 939,217 - Rru_A0786 0.67 -1.6 939,217 - Rru_A0786 0.67 -0.1 939,217 - Rru_A0786 0.67 -0.1
Or see this region's nucleotide sequence