Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0783

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0781 and Rru_A0782 are separated by 137 nucleotidesRru_A0782 and Rru_A0783 are separated by 7 nucleotidesRru_A0783 and Rru_A0784 are separated by 198 nucleotides Rru_A0781: Rru_A0781 - Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI), at 933,308 to 934,411 _A0781 Rru_A0782: Rru_A0782 - hypothetical protein (NCBI), at 934,549 to 934,887 _A0782 Rru_A0783: Rru_A0783 - hypothetical protein (NCBI), at 934,895 to 935,452 _A0783 Rru_A0784: Rru_A0784 - O-acetylhomoserine/O-acetylserine sulfhydrylase (NCBI), at 935,651 to 936,979 _A0784 Position (kb) 934 935 936Strain fitness (log2 ratio) -2 -1 0 1at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.945 kb on - strand, within Rru_A0781at 933.945 kb on - strand, within Rru_A0781at 934.044 kb on - strand, within Rru_A0781at 934.044 kb on - strand, within Rru_A0781at 934.094 kb on + strand, within Rru_A0781at 934.094 kb on + strand, within Rru_A0781at 934.095 kb on - strand, within Rru_A0781at 934.095 kb on - strand, within Rru_A0781at 934.125 kb on - strand, within Rru_A0781at 934.302 kb on - strandat 934.302 kb on - strandat 934.332 kb on + strandat 934.333 kb on - strandat 934.334 kb on + strandat 934.334 kb on + strandat 934.334 kb on + strandat 934.334 kb on + strandat 934.335 kb on - strandat 934.335 kb on - strandat 934.335 kb on - strandat 934.364 kb on + strandat 934.385 kb on + strandat 934.407 kb on - strandat 934.407 kb on - strandat 934.439 kb on + strandat 934.440 kb on - strandat 934.440 kb on - strandat 934.440 kb on - strandat 934.462 kb on - strandat 934.510 kb on + strandat 934.511 kb on - strandat 934.718 kb on - strand, within Rru_A0782at 934.880 kb on - strandat 934.880 kb on - strandat 935.060 kb on + strand, within Rru_A0783at 935.060 kb on + strand, within Rru_A0783at 935.060 kb on + strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.062 kb on + strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.110 kb on - strand, within Rru_A0783at 935.151 kb on + strand, within Rru_A0783at 935.237 kb on + strand, within Rru_A0783at 935.238 kb on - strand, within Rru_A0783at 935.269 kb on + strand, within Rru_A0783at 935.450 kb on + strandat 935.524 kb on + strandat 935.524 kb on + strandat 935.545 kb on + strandat 935.604 kb on - strandat 935.677 kb on + strandat 935.778 kb on - strandat 935.792 kb on + strand, within Rru_A0784at 935.792 kb on + strand, within Rru_A0784at 935.793 kb on - strand, within Rru_A0784at 935.793 kb on - strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.852 kb on - strand, within Rru_A0784at 935.852 kb on - strand, within Rru_A0784at 935.852 kb on - strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 936.140 kb on + strand, within Rru_A0784at 936.140 kb on + strand, within Rru_A0784at 936.141 kb on - strand, within Rru_A0784at 936.141 kb on - strand, within Rru_A0784at 936.143 kb on + strand, within Rru_A0784at 936.238 kb on + strand, within Rru_A0784at 936.239 kb on - strand, within Rru_A0784at 936.239 kb on - strand, within Rru_A0784at 936.297 kb on - strand, within Rru_A0784at 936.312 kb on - strand, within Rru_A0784at 936.422 kb on + strand, within Rru_A0784at 936.422 kb on + strand, within Rru_A0784

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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933,944 + Rru_A0781 0.58 -0.1
933,944 + Rru_A0781 0.58 -0.9
933,944 + Rru_A0781 0.58 -2.2
933,944 + Rru_A0781 0.58 -0.1
933,945 - Rru_A0781 0.58 -0.1
933,945 - Rru_A0781 0.58 -0.1
934,044 - Rru_A0781 0.67 -0.1
934,044 - Rru_A0781 0.67 -0.1
934,094 + Rru_A0781 0.71 -1.8
934,094 + Rru_A0781 0.71 -0.1
934,095 - Rru_A0781 0.71 -1.6
934,095 - Rru_A0781 0.71 -0.1
934,125 - Rru_A0781 0.74 -0.1
934,302 - -0.1
934,302 - -0.6
934,332 + -0.1
934,333 - -0.1
934,334 + -0.1
934,334 + -0.1
934,334 + -1.0
934,334 + -0.1
934,335 - -0.1
934,335 - +0.3
934,335 - -0.1
934,364 + -0.4
934,385 + -0.1
934,407 - -0.1
934,407 - -0.5
934,439 + +0.6
934,440 - -0.1
934,440 - -0.1
934,440 - -0.1
934,462 - -0.1
934,510 + -0.1
934,511 - -0.1
934,718 - Rru_A0782 0.50 -1.1
934,880 - -0.1
934,880 - -0.1
935,060 + Rru_A0783 0.30 -0.1
935,060 + Rru_A0783 0.30 -0.1
935,060 + Rru_A0783 0.30 -0.1
935,061 - Rru_A0783 0.30 -2.1
935,061 - Rru_A0783 0.30 -0.1
935,061 - Rru_A0783 0.30 -2.5
935,062 + Rru_A0783 0.30 -1.4
935,063 - Rru_A0783 0.30 -0.1
935,063 - Rru_A0783 0.30 -0.1
935,063 - Rru_A0783 0.30 -0.1
935,063 - Rru_A0783 0.30 -1.7
935,063 - Rru_A0783 0.30 -0.1
935,110 - Rru_A0783 0.39 -0.1
935,151 + Rru_A0783 0.46 -2.3
935,237 + Rru_A0783 0.61 +0.2
935,238 - Rru_A0783 0.61 -2.0
935,269 + Rru_A0783 0.67 -0.1
935,450 + -0.1
935,524 + -2.6
935,524 + -0.1
935,545 + -1.6
935,604 - -0.1
935,677 + -1.7
935,778 - -0.1
935,792 + Rru_A0784 0.11 -0.1
935,792 + Rru_A0784 0.11 -1.5
935,793 - Rru_A0784 0.11 -0.1
935,793 - Rru_A0784 0.11 -0.1
935,851 + Rru_A0784 0.15 -0.1
935,851 + Rru_A0784 0.15 -0.1
935,851 + Rru_A0784 0.15 +1.4
935,851 + Rru_A0784 0.15 -0.1
935,851 + Rru_A0784 0.15 -0.1
935,851 + Rru_A0784 0.15 -0.1
935,852 - Rru_A0784 0.15 -2.5
935,852 - Rru_A0784 0.15 -0.1
935,852 - Rru_A0784 0.15 -0.1
935,855 + Rru_A0784 0.15 -0.1
935,855 + Rru_A0784 0.15 -0.1
935,855 + Rru_A0784 0.15 -0.1
935,855 + Rru_A0784 0.15 -0.1
935,855 + Rru_A0784 0.15 -2.1
935,856 - Rru_A0784 0.15 -0.1
935,856 - Rru_A0784 0.15 -1.3
935,856 - Rru_A0784 0.15 -2.4
935,856 - Rru_A0784 0.15 -0.1
936,140 + Rru_A0784 0.37 -2.3
936,140 + Rru_A0784 0.37 -0.1
936,141 - Rru_A0784 0.37 -0.1
936,141 - Rru_A0784 0.37 -1.8
936,143 + Rru_A0784 0.37 -0.1
936,238 + Rru_A0784 0.44 -1.6
936,239 - Rru_A0784 0.44 -0.1
936,239 - Rru_A0784 0.44 +0.1
936,297 - Rru_A0784 0.49 -0.1
936,312 - Rru_A0784 0.50 -0.1
936,422 + Rru_A0784 0.58 +0.5
936,422 + Rru_A0784 0.58 -0.1

Or see this region's nucleotide sequence