Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0725

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0723 and Rru_A0724 overlap by 4 nucleotidesRru_A0724 and Rru_A0725 are separated by 4 nucleotidesRru_A0725 and Rru_A0726 overlap by 4 nucleotides Rru_A0723: Rru_A0723 - Amine oxidase (NCBI), at 850,905 to 852,290 _A0723 Rru_A0724: Rru_A0724 - Protein of unknown function DUF1365 (NCBI), at 852,287 to 853,108 _A0724 Rru_A0725: Rru_A0725 - Cyclopropane-fatty-acyl-phospholipid synthase (NCBI), at 853,113 to 854,396 _A0725 Rru_A0726: Rru_A0726 - Major facilitator superfamily MFS_1 (NCBI), at 854,393 to 855,799 _A0726 Position (kb) 853 854 855Strain fitness (log2 ratio) -2 -1 0 1at 852.126 kb on + strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.127 kb on - strand, within Rru_A0723at 852.305 kb on + strandat 852.305 kb on + strandat 852.305 kb on + strandat 852.306 kb on - strandat 852.359 kb on + strandat 852.359 kb on + strandat 852.359 kb on + strandat 852.360 kb on - strandat 852.361 kb on + strandat 852.362 kb on - strandat 852.362 kb on - strandat 852.503 kb on + strand, within Rru_A0724at 852.503 kb on + strand, within Rru_A0724at 852.503 kb on + strand, within Rru_A0724at 852.504 kb on - strand, within Rru_A0724at 852.504 kb on - strand, within Rru_A0724at 852.506 kb on - strand, within Rru_A0724at 852.588 kb on - strand, within Rru_A0724at 852.637 kb on - strand, within Rru_A0724at 852.653 kb on + strand, within Rru_A0724at 852.653 kb on + strand, within Rru_A0724at 852.689 kb on + strand, within Rru_A0724at 852.689 kb on + strand, within Rru_A0724at 852.690 kb on - strand, within Rru_A0724at 852.749 kb on + strand, within Rru_A0724at 852.749 kb on + strand, within Rru_A0724at 852.750 kb on - strand, within Rru_A0724at 852.750 kb on - strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.783 kb on - strand, within Rru_A0724at 853.106 kb on + strandat 853.107 kb on - strandat 853.107 kb on - strandat 853.383 kb on + strand, within Rru_A0725at 853.383 kb on + strand, within Rru_A0725at 853.383 kb on + strand, within Rru_A0725at 853.383 kb on + strand, within Rru_A0725at 853.383 kb on + strand, within Rru_A0725at 853.384 kb on - strand, within Rru_A0725at 853.384 kb on - strand, within Rru_A0725at 853.385 kb on + strand, within Rru_A0725at 853.385 kb on + strand, within Rru_A0725at 853.385 kb on + strand, within Rru_A0725at 853.385 kb on + strand, within Rru_A0725at 853.386 kb on - strand, within Rru_A0725at 853.386 kb on - strand, within Rru_A0725at 853.386 kb on - strand, within Rru_A0725at 853.396 kb on + strand, within Rru_A0725at 853.566 kb on + strand, within Rru_A0725at 853.566 kb on + strand, within Rru_A0725at 853.567 kb on - strand, within Rru_A0725at 853.567 kb on - strand, within Rru_A0725at 853.587 kb on + strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.617 kb on + strand, within Rru_A0725at 853.618 kb on - strand, within Rru_A0725at 853.678 kb on - strand, within Rru_A0725at 853.678 kb on - strand, within Rru_A0725at 853.887 kb on + strand, within Rru_A0725at 853.887 kb on + strand, within Rru_A0725at 853.888 kb on - strand, within Rru_A0725at 853.888 kb on - strand, within Rru_A0725at 853.969 kb on - strand, within Rru_A0725at 853.969 kb on - strand, within Rru_A0725at 854.055 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.088 kb on - strand, within Rru_A0725at 854.088 kb on - strand, within Rru_A0725at 854.088 kb on - strand, within Rru_A0725at 854.135 kb on + strand, within Rru_A0725at 854.187 kb on + strand, within Rru_A0725at 854.188 kb on - strand, within Rru_A0725at 854.188 kb on - strand, within Rru_A0725at 854.289 kb on + strandat 854.289 kb on + strandat 854.290 kb on - strandat 854.292 kb on + strandat 854.292 kb on + strandat 854.292 kb on + strandat 854.293 kb on - strandat 854.302 kb on - strandat 854.302 kb on - strandat 854.346 kb on + strandat 854.347 kb on - strandat 854.347 kb on - strandat 854.347 kb on - strandat 854.453 kb on + strandat 854.669 kb on + strand, within Rru_A0726at 854.669 kb on + strand, within Rru_A0726at 854.670 kb on - strand, within Rru_A0726at 854.670 kb on - strand, within Rru_A0726at 854.747 kb on + strand, within Rru_A0726at 854.748 kb on - strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.805 kb on - strand, within Rru_A0726at 854.805 kb on - strand, within Rru_A0726at 854.807 kb on - strand, within Rru_A0726at 854.807 kb on - strand, within Rru_A0726at 854.837 kb on + strand, within Rru_A0726at 854.838 kb on - strand, within Rru_A0726at 855.230 kb on + strand, within Rru_A0726at 855.230 kb on + strand, within Rru_A0726at 855.231 kb on - strand, within Rru_A0726

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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852,126 + Rru_A0723 0.88 -2.6
852,126 + Rru_A0723 0.88 -0.1
852,126 + Rru_A0723 0.88 -0.1
852,127 - Rru_A0723 0.88 -0.6
852,305 + -0.1
852,305 + -0.6
852,305 + -0.1
852,306 - -2.3
852,359 + -0.1
852,359 + +0.5
852,359 + -0.1
852,360 - -0.7
852,361 + -1.4
852,362 - -0.1
852,362 - -0.1
852,503 + Rru_A0724 0.26 -0.1
852,503 + Rru_A0724 0.26 -0.9
852,503 + Rru_A0724 0.26 -0.1
852,504 - Rru_A0724 0.26 -0.1
852,504 - Rru_A0724 0.26 -0.1
852,506 - Rru_A0724 0.27 -0.1
852,588 - Rru_A0724 0.37 -0.1
852,637 - Rru_A0724 0.43 -0.1
852,653 + Rru_A0724 0.45 -0.5
852,653 + Rru_A0724 0.45 -0.1
852,689 + Rru_A0724 0.49 -1.7
852,689 + Rru_A0724 0.49 -0.9
852,690 - Rru_A0724 0.49 -0.1
852,749 + Rru_A0724 0.56 -0.7
852,749 + Rru_A0724 0.56 -0.1
852,750 - Rru_A0724 0.56 -0.1
852,750 - Rru_A0724 0.56 -0.1
852,782 + Rru_A0724 0.60 -0.8
852,782 + Rru_A0724 0.60 -0.1
852,782 + Rru_A0724 0.60 -0.1
852,782 + Rru_A0724 0.60 -0.1
852,782 + Rru_A0724 0.60 -0.1
852,782 + Rru_A0724 0.60 -0.1
852,783 - Rru_A0724 0.60 -0.1
853,106 + -0.1
853,107 - -1.1
853,107 - -1.7
853,383 + Rru_A0725 0.21 +0.3
853,383 + Rru_A0725 0.21 -0.1
853,383 + Rru_A0725 0.21 -0.1
853,383 + Rru_A0725 0.21 -1.9
853,383 + Rru_A0725 0.21 -1.5
853,384 - Rru_A0725 0.21 -2.4
853,384 - Rru_A0725 0.21 +0.6
853,385 + Rru_A0725 0.21 -0.1
853,385 + Rru_A0725 0.21 -0.1
853,385 + Rru_A0725 0.21 -0.1
853,385 + Rru_A0725 0.21 -0.1
853,386 - Rru_A0725 0.21 -0.1
853,386 - Rru_A0725 0.21 -0.1
853,386 - Rru_A0725 0.21 +1.0
853,396 + Rru_A0725 0.22 -0.1
853,566 + Rru_A0725 0.35 -0.1
853,566 + Rru_A0725 0.35 -0.1
853,567 - Rru_A0725 0.35 -1.1
853,567 - Rru_A0725 0.35 -1.2
853,587 + Rru_A0725 0.37 -0.1
853,588 - Rru_A0725 0.37 -0.3
853,588 - Rru_A0725 0.37 -2.1
853,588 - Rru_A0725 0.37 -0.1
853,588 - Rru_A0725 0.37 -0.1
853,588 - Rru_A0725 0.37 -0.1
853,588 - Rru_A0725 0.37 -1.1
853,588 - Rru_A0725 0.37 -0.1
853,617 + Rru_A0725 0.39 -0.1
853,618 - Rru_A0725 0.39 -0.4
853,678 - Rru_A0725 0.44 -0.1
853,678 - Rru_A0725 0.44 -0.6
853,887 + Rru_A0725 0.60 -0.1
853,887 + Rru_A0725 0.60 -1.2
853,888 - Rru_A0725 0.60 -1.0
853,888 - Rru_A0725 0.60 -0.1
853,969 - Rru_A0725 0.67 -0.1
853,969 - Rru_A0725 0.67 -0.1
854,055 + Rru_A0725 0.73 -0.1
854,087 + Rru_A0725 0.76 -0.1
854,087 + Rru_A0725 0.76 -0.1
854,087 + Rru_A0725 0.76 -0.7
854,087 + Rru_A0725 0.76 -0.1
854,088 - Rru_A0725 0.76 -0.1
854,088 - Rru_A0725 0.76 -0.1
854,088 - Rru_A0725 0.76 -0.1
854,135 + Rru_A0725 0.80 +0.2
854,187 + Rru_A0725 0.84 -0.1
854,188 - Rru_A0725 0.84 -0.1
854,188 - Rru_A0725 0.84 -0.9
854,289 + -0.1
854,289 + -0.1
854,290 - -2.5
854,292 + -1.0
854,292 + -1.4
854,292 + -0.1
854,293 - -0.1
854,302 - -0.1
854,302 - -0.2
854,346 + -0.1
854,347 - -1.4
854,347 - -1.8
854,347 - -0.3
854,453 + -0.1
854,669 + Rru_A0726 0.20 -1.3
854,669 + Rru_A0726 0.20 -1.0
854,670 - Rru_A0726 0.20 -0.1
854,670 - Rru_A0726 0.20 -0.1
854,747 + Rru_A0726 0.25 -1.1
854,748 - Rru_A0726 0.25 -0.1
854,804 + Rru_A0726 0.29 -0.1
854,804 + Rru_A0726 0.29 -1.1
854,804 + Rru_A0726 0.29 -0.1
854,804 + Rru_A0726 0.29 -2.4
854,804 + Rru_A0726 0.29 -1.1
854,805 - Rru_A0726 0.29 +0.1
854,805 - Rru_A0726 0.29 -0.1
854,807 - Rru_A0726 0.29 -0.1
854,807 - Rru_A0726 0.29 -0.1
854,837 + Rru_A0726 0.32 -0.1
854,838 - Rru_A0726 0.32 -1.0
855,230 + Rru_A0726 0.59 -1.2
855,230 + Rru_A0726 0.59 -0.9
855,231 - Rru_A0726 0.60 -2.7

Or see this region's nucleotide sequence