Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0722

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0720 and Rru_A0721 are separated by 52 nucleotidesRru_A0721 and Rru_A0722 overlap by 4 nucleotidesRru_A0722 and Rru_A0723 are separated by 225 nucleotides Rru_A0720: Rru_A0720 - Transcriptional Regulator, MarR family (NCBI), at 848,841 to 849,335 _A0720 Rru_A0721: Rru_A0721 - Anti-Sigm factor, ChrR (NCBI), at 849,388 to 850,062 _A0721 Rru_A0722: Rru_A0722 - Sigma-24 (FecI) (NCBI), at 850,059 to 850,679 _A0722 Rru_A0723: Rru_A0723 - Amine oxidase (NCBI), at 850,905 to 852,290 _A0723 Position (kb) 850 851Strain fitness (log2 ratio) -3 -2 -1 0 1at 849.060 kb on - strand, within Rru_A0720at 849.061 kb on + strand, within Rru_A0720at 849.062 kb on - strand, within Rru_A0720at 849.089 kb on + strand, within Rru_A0720at 849.091 kb on + strand, within Rru_A0720at 849.091 kb on + strand, within Rru_A0720at 849.091 kb on + strand, within Rru_A0720at 849.091 kb on + strand, within Rru_A0720at 849.092 kb on - strand, within Rru_A0720at 849.092 kb on - strand, within Rru_A0720at 849.092 kb on - strand, within Rru_A0720at 849.092 kb on - strand, within Rru_A0720at 849.092 kb on - strand, within Rru_A0720at 849.112 kb on + strand, within Rru_A0720at 849.112 kb on + strand, within Rru_A0720at 849.112 kb on + strand, within Rru_A0720at 849.113 kb on - strand, within Rru_A0720at 849.113 kb on - strand, within Rru_A0720at 849.113 kb on - strand, within Rru_A0720at 849.115 kb on + strand, within Rru_A0720at 849.165 kb on - strand, within Rru_A0720at 849.194 kb on + strand, within Rru_A0720at 849.194 kb on + strand, within Rru_A0720at 849.195 kb on - strand, within Rru_A0720at 849.195 kb on - strand, within Rru_A0720at 849.195 kb on - strand, within Rru_A0720at 849.284 kb on - strand, within Rru_A0720at 849.300 kb on + strandat 849.300 kb on + strandat 849.383 kb on + strandat 849.389 kb on + strandat 849.389 kb on + strandat 849.389 kb on + strandat 849.390 kb on - strandat 849.434 kb on + strandat 849.584 kb on + strand, within Rru_A0721at 849.584 kb on + strand, within Rru_A0721at 849.584 kb on + strand, within Rru_A0721at 849.584 kb on + strand, within Rru_A0721at 849.584 kb on + strand, within Rru_A0721at 849.584 kb on + strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 849.585 kb on - strand, within Rru_A0721at 850.344 kb on - strand, within Rru_A0722at 850.368 kb on - strand, within Rru_A0722at 850.505 kb on - strand, within Rru_A0722at 850.505 kb on - strand, within Rru_A0722at 850.804 kb on + strandat 850.804 kb on + strandat 850.804 kb on + strandat 850.805 kb on - strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.862 kb on + strandat 850.862 kb on + strandat 850.904 kb on + strandat 850.915 kb on + strandat 850.915 kb on + strandat 850.916 kb on - strandat 851.031 kb on + strandat 851.031 kb on + strandat 851.031 kb on + strandat 851.031 kb on + strandat 851.032 kb on - strandat 851.061 kb on - strand, within Rru_A0723at 851.127 kb on + strand, within Rru_A0723at 851.127 kb on + strand, within Rru_A0723at 851.128 kb on - strand, within Rru_A0723at 851.128 kb on - strand, within Rru_A0723at 851.130 kb on - strand, within Rru_A0723at 851.130 kb on - strand, within Rru_A0723at 851.142 kb on + strand, within Rru_A0723at 851.143 kb on - strand, within Rru_A0723at 851.238 kb on + strand, within Rru_A0723at 851.397 kb on - strand, within Rru_A0723at 851.409 kb on + strand, within Rru_A0723at 851.491 kb on - strand, within Rru_A0723at 851.590 kb on - strand, within Rru_A0723at 851.594 kb on + strand, within Rru_A0723

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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849,060 - Rru_A0720 0.44 -0.1
849,061 + Rru_A0720 0.44 -0.1
849,062 - Rru_A0720 0.45 -1.1
849,089 + Rru_A0720 0.50 -1.1
849,091 + Rru_A0720 0.51 -0.3
849,091 + Rru_A0720 0.51 -1.9
849,091 + Rru_A0720 0.51 -0.1
849,091 + Rru_A0720 0.51 -0.1
849,092 - Rru_A0720 0.51 -0.1
849,092 - Rru_A0720 0.51 -0.1
849,092 - Rru_A0720 0.51 -0.1
849,092 - Rru_A0720 0.51 -0.1
849,092 - Rru_A0720 0.51 -0.1
849,112 + Rru_A0720 0.55 -0.1
849,112 + Rru_A0720 0.55 -0.1
849,112 + Rru_A0720 0.55 -0.1
849,113 - Rru_A0720 0.55 -0.1
849,113 - Rru_A0720 0.55 -0.1
849,113 - Rru_A0720 0.55 -1.7
849,115 + Rru_A0720 0.55 -0.1
849,165 - Rru_A0720 0.65 -0.1
849,194 + Rru_A0720 0.71 -0.1
849,194 + Rru_A0720 0.71 -0.1
849,195 - Rru_A0720 0.72 -0.1
849,195 - Rru_A0720 0.72 -0.1
849,195 - Rru_A0720 0.72 -0.1
849,284 - Rru_A0720 0.89 -0.1
849,300 + -1.1
849,300 + -0.1
849,383 + -0.1
849,389 + -0.1
849,389 + -0.1
849,389 + -0.1
849,390 - -0.1
849,434 + -0.1
849,584 + Rru_A0721 0.29 -3.7
849,584 + Rru_A0721 0.29 -1.7
849,584 + Rru_A0721 0.29 -2.1
849,584 + Rru_A0721 0.29 -0.1
849,584 + Rru_A0721 0.29 -0.1
849,584 + Rru_A0721 0.29 -0.1
849,585 - Rru_A0721 0.29 -0.1
849,585 - Rru_A0721 0.29 -0.1
849,585 - Rru_A0721 0.29 -0.1
849,585 - Rru_A0721 0.29 -1.4
849,585 - Rru_A0721 0.29 -2.0
849,585 - Rru_A0721 0.29 -0.1
849,585 - Rru_A0721 0.29 -0.1
850,344 - Rru_A0722 0.46 -0.1
850,368 - Rru_A0722 0.50 -0.1
850,505 - Rru_A0722 0.72 -2.0
850,505 - Rru_A0722 0.72 -0.1
850,804 + -0.1
850,804 + -0.1
850,804 + -0.1
850,805 - -1.1
850,848 + -0.1
850,848 + -0.1
850,848 + -1.1
850,848 + -0.1
850,848 + -0.1
850,862 + -0.8
850,862 + -0.1
850,904 + -0.1
850,915 + -1.2
850,915 + -0.1
850,916 - -0.9
851,031 + -1.9
851,031 + -1.3
851,031 + -0.1
851,031 + -1.1
851,032 - -0.1
851,061 - Rru_A0723 0.11 +0.4
851,127 + Rru_A0723 0.16 -0.1
851,127 + Rru_A0723 0.16 -1.1
851,128 - Rru_A0723 0.16 -0.1
851,128 - Rru_A0723 0.16 -1.1
851,130 - Rru_A0723 0.16 -0.1
851,130 - Rru_A0723 0.16 -0.1
851,142 + Rru_A0723 0.17 -1.0
851,143 - Rru_A0723 0.17 -0.1
851,238 + Rru_A0723 0.24 -1.5
851,397 - Rru_A0723 0.35 +0.3
851,409 + Rru_A0723 0.36 -0.1
851,491 - Rru_A0723 0.42 -0.8
851,590 - Rru_A0723 0.49 -0.1
851,594 + Rru_A0723 0.50 -0.1

Or see this region's nucleotide sequence