Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0692

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0691 and Rru_A0692 are separated by 94 nucleotidesRru_A0692 and Rru_A0693 are separated by 15 nucleotides Rru_A0691: Rru_A0691 - Predicted signal transduction protein (NCBI), at 819,287 to 820,453 _A0691 Rru_A0692: Rru_A0692 - Response regulator receiver domain protein (CheY) (NCBI), at 820,548 to 821,720 _A0692 Rru_A0693: Rru_A0693 - Signal Transduction Histidine Kinase (NCBI), at 821,736 to 822,938 _A0693 Position (kb) 820 821 822Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.588 kb on - strand, within Rru_A0691at 819.588 kb on - strand, within Rru_A0691at 819.725 kb on + strand, within Rru_A0691at 819.726 kb on - strand, within Rru_A0691at 819.726 kb on - strand, within Rru_A0691at 819.766 kb on + strand, within Rru_A0691at 819.767 kb on - strand, within Rru_A0691at 819.767 kb on - strand, within Rru_A0691at 820.278 kb on - strand, within Rru_A0691at 820.278 kb on - strand, within Rru_A0691at 820.324 kb on + strand, within Rru_A0691at 820.324 kb on + strand, within Rru_A0691at 820.324 kb on + strand, within Rru_A0691at 820.324 kb on + strand, within Rru_A0691at 820.324 kb on + strand, within Rru_A0691at 820.325 kb on - strand, within Rru_A0691at 820.325 kb on - strand, within Rru_A0691at 820.325 kb on - strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.329 kb on - strand, within Rru_A0691at 820.329 kb on - strand, within Rru_A0691at 820.329 kb on - strand, within Rru_A0691at 820.410 kb on - strandat 820.911 kb on + strand, within Rru_A0692at 820.982 kb on + strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.998 kb on + strand, within Rru_A0692at 820.998 kb on + strand, within Rru_A0692at 821.011 kb on - strand, within Rru_A0692at 821.234 kb on + strand, within Rru_A0692at 821.234 kb on + strand, within Rru_A0692at 821.235 kb on - strand, within Rru_A0692at 821.268 kb on + strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.467 kb on + strand, within Rru_A0692at 821.534 kb on + strand, within Rru_A0692at 821.534 kb on + strand, within Rru_A0692at 821.535 kb on - strand, within Rru_A0692at 821.737 kb on + strandat 821.737 kb on + strandat 821.737 kb on + strandat 821.738 kb on - strandat 821.766 kb on - strandat 821.989 kb on + strand, within Rru_A0693at 821.990 kb on - strand, within Rru_A0693at 821.990 kb on - strand, within Rru_A0693at 821.990 kb on - strand, within Rru_A0693at 822.139 kb on + strand, within Rru_A0693at 822.139 kb on + strand, within Rru_A0693at 822.140 kb on - strand, within Rru_A0693at 822.140 kb on - strand, within Rru_A0693at 822.140 kb on - strand, within Rru_A0693at 822.140 kb on - strand, within Rru_A0693at 822.190 kb on + strand, within Rru_A0693at 822.191 kb on - strand, within Rru_A0693at 822.408 kb on + strand, within Rru_A0693at 822.494 kb on - strand, within Rru_A0693at 822.525 kb on + strand, within Rru_A0693at 822.593 kb on - strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.628 kb on - strand, within Rru_A0693at 822.628 kb on - strand, within Rru_A0693at 822.628 kb on - strand, within Rru_A0693

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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819,587 + Rru_A0691 0.26 -1.1
819,587 + Rru_A0691 0.26 -0.3
819,587 + Rru_A0691 0.26 -1.8
819,587 + Rru_A0691 0.26 -0.1
819,587 + Rru_A0691 0.26 -1.9
819,588 - Rru_A0691 0.26 -0.1
819,588 - Rru_A0691 0.26 -2.6
819,725 + Rru_A0691 0.38 -1.1
819,726 - Rru_A0691 0.38 -2.9
819,726 - Rru_A0691 0.38 -0.1
819,766 + Rru_A0691 0.41 -0.1
819,767 - Rru_A0691 0.41 -0.1
819,767 - Rru_A0691 0.41 -2.4
820,278 - Rru_A0691 0.85 -0.1
820,278 - Rru_A0691 0.85 -1.1
820,324 + Rru_A0691 0.89 -0.1
820,324 + Rru_A0691 0.89 -0.1
820,324 + Rru_A0691 0.89 -0.1
820,324 + Rru_A0691 0.89 -0.1
820,324 + Rru_A0691 0.89 -0.1
820,325 - Rru_A0691 0.89 -0.1
820,325 - Rru_A0691 0.89 -0.1
820,325 - Rru_A0691 0.89 -0.1
820,328 + Rru_A0691 0.89 -0.1
820,328 + Rru_A0691 0.89 -0.1
820,328 + Rru_A0691 0.89 -0.1
820,328 + Rru_A0691 0.89 -0.9
820,328 + Rru_A0691 0.89 -0.1
820,328 + Rru_A0691 0.89 -2.5
820,328 + Rru_A0691 0.89 -0.1
820,328 + Rru_A0691 0.89 -0.1
820,329 - Rru_A0691 0.89 -0.1
820,329 - Rru_A0691 0.89 -0.1
820,329 - Rru_A0691 0.89 -0.1
820,410 - -0.1
820,911 + Rru_A0692 0.31 -0.1
820,982 + Rru_A0692 0.37 +0.6
820,983 - Rru_A0692 0.37 -0.1
820,983 - Rru_A0692 0.37 -0.1
820,983 - Rru_A0692 0.37 -0.2
820,983 - Rru_A0692 0.37 -0.1
820,998 + Rru_A0692 0.38 -0.1
820,998 + Rru_A0692 0.38 -0.1
821,011 - Rru_A0692 0.39 -0.1
821,234 + Rru_A0692 0.58 -2.1
821,234 + Rru_A0692 0.58 -0.1
821,235 - Rru_A0692 0.59 -1.8
821,268 + Rru_A0692 0.61 -0.1
821,269 - Rru_A0692 0.61 -0.1
821,269 - Rru_A0692 0.61 -0.1
821,269 - Rru_A0692 0.61 -0.1
821,269 - Rru_A0692 0.61 -0.1
821,442 + Rru_A0692 0.76 -0.1
821,442 + Rru_A0692 0.76 -0.1
821,442 + Rru_A0692 0.76 -0.1
821,442 + Rru_A0692 0.76 -2.4
821,442 + Rru_A0692 0.76 -0.1
821,467 + Rru_A0692 0.78 -1.9
821,534 + Rru_A0692 0.84 -0.1
821,534 + Rru_A0692 0.84 -0.1
821,535 - Rru_A0692 0.84 -2.3
821,737 + -0.1
821,737 + -1.9
821,737 + -0.1
821,738 - -2.0
821,766 - -0.1
821,989 + Rru_A0693 0.21 -0.1
821,990 - Rru_A0693 0.21 -1.5
821,990 - Rru_A0693 0.21 -0.1
821,990 - Rru_A0693 0.21 -0.1
822,139 + Rru_A0693 0.33 -0.1
822,139 + Rru_A0693 0.33 -0.1
822,140 - Rru_A0693 0.34 -0.1
822,140 - Rru_A0693 0.34 -1.9
822,140 - Rru_A0693 0.34 -2.2
822,140 - Rru_A0693 0.34 -0.1
822,190 + Rru_A0693 0.38 -0.1
822,191 - Rru_A0693 0.38 -4.5
822,408 + Rru_A0693 0.56 -0.1
822,494 - Rru_A0693 0.63 -0.1
822,525 + Rru_A0693 0.66 -0.1
822,593 - Rru_A0693 0.71 -0.1
822,627 + Rru_A0693 0.74 -0.9
822,627 + Rru_A0693 0.74 -1.6
822,627 + Rru_A0693 0.74 -0.1
822,627 + Rru_A0693 0.74 -1.6
822,627 + Rru_A0693 0.74 -0.1
822,627 + Rru_A0693 0.74 -1.9
822,628 - Rru_A0693 0.74 -1.9
822,628 - Rru_A0693 0.74 -0.1
822,628 - Rru_A0693 0.74 -1.8

Or see this region's nucleotide sequence