Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0678 and Rru_A0679 are separated by 229 nucleotides Rru_A0679 and Rru_A0680 are separated by 95 nucleotides Rru_A0680 and Rru_A0681 are separated by 201 nucleotides
Rru_A0678: Rru_A0678 - Multi antimicrobial extrusion protein MatE (NCBI), at 800,799 to 802,190
_A0678
Rru_A0679: Rru_A0679 - Transcriptional Regulator, TetR family (NCBI), at 802,420 to 803,043
_A0679
Rru_A0680: Rru_A0680 - hypothetical protein (NCBI), at 803,139 to 803,831
_A0680
Rru_A0681: Rru_A0681 - hypothetical protein (NCBI), at 804,033 to 804,701
_A0681
Position (kb) 803
804 Strain fitness (log2 ratio) -2
-1
0
1 at 802.160 kb on + strand at 802.344 kb on + strand at 802.344 kb on + strand at 802.345 kb on - strand at 802.345 kb on - strand at 802.372 kb on + strand at 802.373 kb on - strand at 802.373 kb on - strand at 802.381 kb on - strand at 802.450 kb on + strand at 802.663 kb on - strand, within Rru_A0679 at 802.664 kb on + strand, within Rru_A0679 at 802.665 kb on - strand, within Rru_A0679 at 802.756 kb on - strand, within Rru_A0679 at 802.761 kb on - strand, within Rru_A0679 at 802.767 kb on + strand, within Rru_A0679 at 802.768 kb on - strand, within Rru_A0679 at 802.768 kb on - strand, within Rru_A0679 at 802.768 kb on - strand, within Rru_A0679 at 802.829 kb on - strand, within Rru_A0679 at 803.153 kb on - strand at 803.409 kb on + strand, within Rru_A0680 at 803.410 kb on - strand, within Rru_A0680 at 803.514 kb on + strand, within Rru_A0680 at 803.515 kb on - strand, within Rru_A0680 at 803.515 kb on - strand, within Rru_A0680 at 803.773 kb on + strand at 803.784 kb on + strand at 803.784 kb on + strand at 803.785 kb on - strand at 803.785 kb on - strand at 803.879 kb on - strand at 803.898 kb on + strand at 803.898 kb on + strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.904 kb on + strand at 803.904 kb on + strand at 803.919 kb on + strand at 803.920 kb on - strand at 804.010 kb on + strand at 804.010 kb on + strand at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.693 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.696 kb on - strand at 804.758 kb on + strand at 804.799 kb on + strand at 804.799 kb on + strand at 804.800 kb on - strand at 804.800 kb on - strand at 804.800 kb on - strand at 804.818 kb on + strand at 804.818 kb on + strand at 804.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 802,160 + -1.7 802,344 + -0.6 802,344 + -0.1 802,345 - -0.1 802,345 - -0.1 802,372 + +0.2 802,373 - -0.1 802,373 - -0.1 802,381 - -0.1 802,450 + -2.7 802,663 - Rru_A0679 0.39 -0.1 802,664 + Rru_A0679 0.39 -0.1 802,665 - Rru_A0679 0.39 +0.0 802,756 - Rru_A0679 0.54 -0.1 802,761 - Rru_A0679 0.55 -1.5 802,767 + Rru_A0679 0.56 -0.1 802,768 - Rru_A0679 0.56 -0.1 802,768 - Rru_A0679 0.56 -0.1 802,768 - Rru_A0679 0.56 -0.1 802,829 - Rru_A0679 0.66 -0.1 803,153 - -0.1 803,409 + Rru_A0680 0.39 -0.1 803,410 - Rru_A0680 0.39 -0.1 803,514 + Rru_A0680 0.54 +1.5 803,515 - Rru_A0680 0.54 -0.1 803,515 - Rru_A0680 0.54 -0.1 803,773 + -0.1 803,784 + -0.1 803,784 + -0.1 803,785 - -0.1 803,785 - -0.6 803,879 - -0.1 803,898 + -0.1 803,898 + -0.1 803,899 - -1.0 803,899 - -0.1 803,899 - -0.1 803,899 - -0.7 803,899 - -0.1 803,904 + -1.3 803,904 + -0.1 803,919 + -2.1 803,920 - -0.1 804,010 + -2.0 804,010 + -0.1 804,311 + Rru_A0681 0.42 -0.1 804,311 + Rru_A0681 0.42 -0.1 804,311 + Rru_A0681 0.42 -0.1 804,311 + Rru_A0681 0.42 -0.1 804,312 - Rru_A0681 0.42 -0.1 804,312 - Rru_A0681 0.42 -2.4 804,312 - Rru_A0681 0.42 -0.1 804,693 + -1.4 804,695 + -0.1 804,695 + -0.1 804,695 + -0.1 804,695 + -1.9 804,696 - -0.1 804,758 + -1.1 804,799 + -0.1 804,799 + -2.4 804,800 - -0.1 804,800 - -0.1 804,800 - -0.1 804,818 + -2.3 804,818 + -0.3 804,819 - -0.1
Or see this region's nucleotide sequence