Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0602

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0600 and Rru_A0601 are separated by 77 nucleotidesRru_A0601 and Rru_A0602 are separated by 65 nucleotidesRru_A0602 and Rru_A0603 overlap by 4 nucleotidesRru_A0603 and Rru_A0604 are separated by 13 nucleotides Rru_A0600: Rru_A0600 - Phosphate transport system permease protein 2 (NCBI), at 713,486 to 714,766 _A0600 Rru_A0601: Rru_A0601 - Phosphate transport system permease protein 1 (NCBI), at 714,844 to 715,590 _A0601 Rru_A0602: Rru_A0602 - Phosphate uptake regulator, PhoU (NCBI), at 715,656 to 716,387 _A0602 Rru_A0603: Rru_A0603 - Two component Transcriptional regulator, Winged helix family (NCBI), at 716,384 to 717,085 _A0603 Rru_A0604: Rru_A0604 - hypothetical protein (NCBI), at 717,099 to 717,278 _A0604 Position (kb) 715 716 717Strain fitness (log2 ratio) -3 -2 -1 0 1at 715.052 kb on - strand, within Rru_A0601at 715.424 kb on - strand, within Rru_A0601at 715.651 kb on + strandat 715.651 kb on + strandat 715.651 kb on + strandat 715.651 kb on + strandat 715.651 kb on + strandat 715.652 kb on - strandat 715.956 kb on + strand, within Rru_A0602at 715.957 kb on - strand, within Rru_A0602at 716.066 kb on + strand, within Rru_A0602at 716.067 kb on - strand, within Rru_A0602at 716.079 kb on + strand, within Rru_A0602at 716.079 kb on + strand, within Rru_A0602at 716.079 kb on + strand, within Rru_A0602at 716.080 kb on - strand, within Rru_A0602at 716.145 kb on + strand, within Rru_A0602at 716.146 kb on - strand, within Rru_A0602at 716.146 kb on - strand, within Rru_A0602at 716.146 kb on - strand, within Rru_A0602at 716.146 kb on - strand, within Rru_A0602at 716.176 kb on - strand, within Rru_A0602at 716.176 kb on - strand, within Rru_A0602at 716.176 kb on - strand, within Rru_A0602at 716.176 kb on - strand, within Rru_A0602at 716.210 kb on + strand, within Rru_A0602at 716.211 kb on - strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.287 kb on - strand, within Rru_A0602at 716.287 kb on - strand, within Rru_A0602at 716.442 kb on - strandat 716.443 kb on + strandat 716.687 kb on + strand, within Rru_A0603at 716.688 kb on - strand, within Rru_A0603at 716.690 kb on - strand, within Rru_A0603at 716.690 kb on - strand, within Rru_A0603at 716.783 kb on + strand, within Rru_A0603at 716.784 kb on - strand, within Rru_A0603at 716.837 kb on + strand, within Rru_A0603at 716.838 kb on - strand, within Rru_A0603at 716.838 kb on - strand, within Rru_A0603at 716.838 kb on - strand, within Rru_A0603at 716.948 kb on + strand, within Rru_A0603at 717.083 kb on + strandat 717.083 kb on + strandat 717.083 kb on + strandat 717.084 kb on - strandat 717.084 kb on - strandat 717.283 kb on - strandat 717.296 kb on + strandat 717.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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715,052 - Rru_A0601 0.28 -0.1
715,424 - Rru_A0601 0.78 -0.1
715,651 + -0.1
715,651 + -0.1
715,651 + -0.3
715,651 + -2.1
715,651 + -0.1
715,652 - -0.1
715,956 + Rru_A0602 0.41 -0.1
715,957 - Rru_A0602 0.41 -0.1
716,066 + Rru_A0602 0.56 -0.1
716,067 - Rru_A0602 0.56 -0.1
716,079 + Rru_A0602 0.58 -2.3
716,079 + Rru_A0602 0.58 -0.1
716,079 + Rru_A0602 0.58 -0.1
716,080 - Rru_A0602 0.58 -0.1
716,145 + Rru_A0602 0.67 -0.1
716,146 - Rru_A0602 0.67 -1.3
716,146 - Rru_A0602 0.67 -0.1
716,146 - Rru_A0602 0.67 -0.1
716,146 - Rru_A0602 0.67 -0.1
716,176 - Rru_A0602 0.71 -3.3
716,176 - Rru_A0602 0.71 -0.1
716,176 - Rru_A0602 0.71 -1.2
716,176 - Rru_A0602 0.71 -0.1
716,210 + Rru_A0602 0.76 -2.3
716,211 - Rru_A0602 0.76 -0.1
716,286 + Rru_A0602 0.86 -0.1
716,286 + Rru_A0602 0.86 -0.5
716,286 + Rru_A0602 0.86 -0.1
716,286 + Rru_A0602 0.86 -0.1
716,286 + Rru_A0602 0.86 -0.1
716,286 + Rru_A0602 0.86 -0.1
716,286 + Rru_A0602 0.86 -2.2
716,286 + Rru_A0602 0.86 -2.9
716,287 - Rru_A0602 0.86 -0.9
716,287 - Rru_A0602 0.86 -0.1
716,442 - -0.1
716,443 + -0.1
716,687 + Rru_A0603 0.43 -1.1
716,688 - Rru_A0603 0.43 -0.1
716,690 - Rru_A0603 0.44 -0.1
716,690 - Rru_A0603 0.44 -3.2
716,783 + Rru_A0603 0.57 -0.1
716,784 - Rru_A0603 0.57 -0.1
716,837 + Rru_A0603 0.65 -0.1
716,838 - Rru_A0603 0.65 -0.1
716,838 - Rru_A0603 0.65 -0.1
716,838 - Rru_A0603 0.65 -0.1
716,948 + Rru_A0603 0.80 -0.1
717,083 + -0.1
717,083 + -0.1
717,083 + -1.1
717,084 - -0.1
717,084 - -1.6
717,283 - -0.1
717,296 + -0.1
717,317 - -0.1

Or see this region's nucleotide sequence