Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0554 and Rru_A0555 are separated by 14 nucleotides Rru_A0555 and Rru_A0556 are separated by 219 nucleotides
Rru_A0554: Rru_A0554 - Rh-like protein/ammonium transporter (NCBI), at 655,212 to 656,531
_A0554
Rru_A0555: Rru_A0555 - Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI), at 656,546 to 656,884
_A0555
Rru_A0556: Rru_A0556 - Formyltetrahydrofolate deformylase (NCBI), at 657,104 to 657,997
_A0556
Position (kb) 656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 655.687 kb on + strand, within Rru_A0554 at 655.687 kb on + strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.805 kb on + strand, within Rru_A0554 at 655.806 kb on - strand, within Rru_A0554 at 655.806 kb on - strand, within Rru_A0554 at 656.604 kb on + strand, within Rru_A0555 at 656.733 kb on + strand, within Rru_A0555 at 656.734 kb on - strand, within Rru_A0555 at 656.734 kb on - strand, within Rru_A0555 at 656.749 kb on - strand, within Rru_A0555 at 657.229 kb on - strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.295 kb on - strand, within Rru_A0556 at 657.295 kb on - strand, within Rru_A0556 at 657.346 kb on - strand, within Rru_A0556 at 657.388 kb on + strand, within Rru_A0556 at 657.388 kb on + strand, within Rru_A0556 at 657.444 kb on + strand, within Rru_A0556 at 657.444 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.655 kb on - strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.850 kb on - strand, within Rru_A0556 at 657.850 kb on - strand, within Rru_A0556 at 657.852 kb on + strand, within Rru_A0556 at 657.853 kb on - strand, within Rru_A0556 at 657.853 kb on - strand, within Rru_A0556
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 655,687 + Rru_A0554 0.36 -0.1 655,687 + Rru_A0554 0.36 -0.1 655,688 - Rru_A0554 0.36 -0.1 655,688 - Rru_A0554 0.36 -0.1 655,688 - Rru_A0554 0.36 -0.1 655,688 - Rru_A0554 0.36 -0.4 655,805 + Rru_A0554 0.45 -0.1 655,806 - Rru_A0554 0.45 -0.1 655,806 - Rru_A0554 0.45 -0.1 656,604 + Rru_A0555 0.17 -0.1 656,733 + Rru_A0555 0.55 -0.5 656,734 - Rru_A0555 0.55 -0.1 656,734 - Rru_A0555 0.55 +0.3 656,749 - Rru_A0555 0.60 -0.1 657,229 - Rru_A0556 0.14 -0.1 657,294 + Rru_A0556 0.21 -0.1 657,294 + Rru_A0556 0.21 -0.1 657,294 + Rru_A0556 0.21 -0.1 657,295 - Rru_A0556 0.21 -0.1 657,295 - Rru_A0556 0.21 -0.1 657,346 - Rru_A0556 0.27 -3.3 657,388 + Rru_A0556 0.32 -0.1 657,388 + Rru_A0556 0.32 -2.1 657,444 + Rru_A0556 0.38 -0.1 657,444 + Rru_A0556 0.38 -0.1 657,654 + Rru_A0556 0.62 -0.1 657,654 + Rru_A0556 0.62 -0.1 657,654 + Rru_A0556 0.62 -0.1 657,654 + Rru_A0556 0.62 -0.1 657,655 - Rru_A0556 0.62 -0.1 657,849 + Rru_A0556 0.83 -0.1 657,849 + Rru_A0556 0.83 -3.1 657,849 + Rru_A0556 0.83 -2.5 657,849 + Rru_A0556 0.83 -0.1 657,850 - Rru_A0556 0.83 -0.1 657,850 - Rru_A0556 0.83 -0.1 657,852 + Rru_A0556 0.84 -3.2 657,853 - Rru_A0556 0.84 -0.1 657,853 - Rru_A0556 0.84 -0.1
Or see this region's nucleotide sequence