Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0300 and Rru_A0301 are separated by 81 nucleotides Rru_A0301 and Rru_A0302 are separated by 169 nucleotides Rru_A0302 and Rru_A0303 are separated by 438 nucleotides
Rru_A0300: Rru_A0300 - Aminotransferase, class IV (NCBI), at 367,184 to 368,038
_A0300
Rru_A0301: Rru_A0301 - Alkylhydroperoxidase AhpD core (NCBI), at 368,120 to 368,533
_A0301
Rru_A0302: Rru_A0302 - Hydrogenase accessory protein HypB (NCBI), at 368,703 to 369,593
_A0302
Rru_A0303: Rru_A0303 - hypothetical protein (NCBI), at 370,032 to 371,339
_A0303
Position (kb) 368
369
370 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 367.933 kb on + strand, within Rru_A0300 at 368.015 kb on + strand at 368.016 kb on - strand at 368.037 kb on - strand at 368.057 kb on + strand at 368.058 kb on - strand at 368.087 kb on + strand at 368.087 kb on + strand at 368.225 kb on - strand, within Rru_A0301 at 368.339 kb on + strand, within Rru_A0301 at 368.339 kb on + strand, within Rru_A0301 at 368.339 kb on + strand, within Rru_A0301 at 368.340 kb on - strand, within Rru_A0301 at 368.340 kb on - strand, within Rru_A0301 at 368.362 kb on + strand, within Rru_A0301 at 368.362 kb on + strand, within Rru_A0301 at 368.362 kb on + strand, within Rru_A0301 at 368.363 kb on - strand, within Rru_A0301 at 368.363 kb on - strand, within Rru_A0301 at 368.363 kb on - strand, within Rru_A0301 at 368.363 kb on - strand, within Rru_A0301 at 368.363 kb on - strand, within Rru_A0301 at 368.372 kb on + strand, within Rru_A0301 at 368.372 kb on + strand, within Rru_A0301 at 368.372 kb on + strand, within Rru_A0301 at 368.373 kb on - strand, within Rru_A0301 at 368.532 kb on - strand at 368.611 kb on + strand at 368.612 kb on - strand at 369.212 kb on + strand, within Rru_A0302 at 369.212 kb on + strand, within Rru_A0302 at 369.212 kb on + strand, within Rru_A0302 at 369.212 kb on + strand, within Rru_A0302 at 369.212 kb on + strand, within Rru_A0302 at 369.213 kb on - strand, within Rru_A0302 at 369.213 kb on - strand, within Rru_A0302 at 369.213 kb on - strand, within Rru_A0302 at 369.605 kb on + strand at 369.605 kb on + strand at 369.605 kb on + strand at 369.605 kb on + strand at 369.606 kb on - strand at 369.668 kb on + strand at 369.669 kb on - strand at 369.670 kb on + strand at 369.670 kb on + strand at 369.671 kb on - strand at 369.671 kb on - strand at 369.844 kb on + strand at 369.844 kb on + strand at 369.845 kb on - strand at 369.845 kb on - strand at 369.845 kb on - strand at 369.845 kb on - strand at 369.846 kb on + strand at 369.891 kb on + strand at 369.891 kb on + strand at 369.891 kb on + strand at 369.892 kb on - strand at 369.892 kb on - strand at 369.892 kb on - strand at 369.914 kb on - strand at 369.945 kb on - strand at 370.028 kb on + strand at 370.029 kb on - strand at 370.078 kb on + strand at 370.083 kb on - strand at 370.173 kb on - strand, within Rru_A0303 at 370.305 kb on + strand, within Rru_A0303 at 370.391 kb on + strand, within Rru_A0303 at 370.485 kb on + strand, within Rru_A0303 at 370.522 kb on + strand, within Rru_A0303 at 370.529 kb on - strand, within Rru_A0303
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 367,933 + Rru_A0300 0.88 -0.1 368,015 + -0.8 368,016 - -0.1 368,037 - -1.6 368,057 + -0.1 368,058 - -0.1 368,087 + -0.1 368,087 + -0.1 368,225 - Rru_A0301 0.25 -0.1 368,339 + Rru_A0301 0.53 -3.8 368,339 + Rru_A0301 0.53 -1.7 368,339 + Rru_A0301 0.53 -1.0 368,340 - Rru_A0301 0.53 -0.1 368,340 - Rru_A0301 0.53 -0.1 368,362 + Rru_A0301 0.58 -0.1 368,362 + Rru_A0301 0.58 -0.1 368,362 + Rru_A0301 0.58 -0.1 368,363 - Rru_A0301 0.59 -0.1 368,363 - Rru_A0301 0.59 -0.1 368,363 - Rru_A0301 0.59 -0.1 368,363 - Rru_A0301 0.59 -0.1 368,363 - Rru_A0301 0.59 -0.1 368,372 + Rru_A0301 0.61 -1.1 368,372 + Rru_A0301 0.61 -1.1 368,372 + Rru_A0301 0.61 -0.1 368,373 - Rru_A0301 0.61 -0.1 368,532 - -0.1 368,611 + -1.3 368,612 - -0.1 369,212 + Rru_A0302 0.57 -0.1 369,212 + Rru_A0302 0.57 -0.1 369,212 + Rru_A0302 0.57 -0.1 369,212 + Rru_A0302 0.57 -1.6 369,212 + Rru_A0302 0.57 -1.6 369,213 - Rru_A0302 0.57 -0.1 369,213 - Rru_A0302 0.57 -0.1 369,213 - Rru_A0302 0.57 -0.1 369,605 + -1.6 369,605 + -1.6 369,605 + -0.1 369,605 + -2.1 369,606 - -1.7 369,668 + -0.4 369,669 - -0.3 369,670 + -0.1 369,670 + -0.1 369,671 - -0.1 369,671 - -1.1 369,844 + -0.1 369,844 + -0.1 369,845 - -0.1 369,845 - -1.1 369,845 - -0.1 369,845 - -0.1 369,846 + -2.0 369,891 + -0.1 369,891 + -1.1 369,891 + -0.1 369,892 - -0.1 369,892 - -0.1 369,892 - -0.7 369,914 - -0.1 369,945 - -0.1 370,028 + -0.1 370,029 - -0.5 370,078 + -0.1 370,083 - -0.1 370,173 - Rru_A0303 0.11 -0.1 370,305 + Rru_A0303 0.21 -0.1 370,391 + Rru_A0303 0.27 -0.1 370,485 + Rru_A0303 0.35 -0.1 370,522 + Rru_A0303 0.37 +0.3 370,529 - Rru_A0303 0.38 -0.1
Or see this region's nucleotide sequence