Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0222 and Rru_A0223 are separated by 446 nucleotides Rru_A0223 and Rru_A0224 are separated by 17 nucleotides Rru_A0224 and Rru_A0225 overlap by 4 nucleotides
Rru_A0222: Rru_A0222 - Glyceraldehyde-3-phosphate dehydrogenase, type I (NCBI), at 273,545 to 274,552
_A0222
Rru_A0223: Rru_A0223 - Protein of unknown function DUF344 (NCBI), at 274,999 to 276,603
_A0223
Rru_A0224: Rru_A0224 - Protein of unknown function DUF160 (NCBI), at 276,621 to 277,595
_A0224
Rru_A0225: Rru_A0225 - Metal dependent phosphohydrolase, HD region (NCBI), at 277,592 to 278,266
_A0225
Position (kb) 274
275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 274.567 kb on - strand at 274.949 kb on + strand at 274.949 kb on + strand at 274.949 kb on + strand at 274.949 kb on + strand at 274.949 kb on + strand at 274.950 kb on - strand at 274.950 kb on - strand at 274.950 kb on - strand at 274.950 kb on - strand at 274.993 kb on - strand at 274.993 kb on - strand at 275.145 kb on + strand at 275.145 kb on + strand at 275.145 kb on + strand at 275.218 kb on + strand, within Rru_A0223 at 275.219 kb on - strand, within Rru_A0223 at 275.439 kb on + strand, within Rru_A0223 at 275.440 kb on - strand, within Rru_A0223 at 275.485 kb on - strand, within Rru_A0223 at 275.554 kb on + strand, within Rru_A0223 at 275.554 kb on + strand, within Rru_A0223 at 275.554 kb on + strand, within Rru_A0223 at 275.555 kb on - strand, within Rru_A0223 at 275.622 kb on + strand, within Rru_A0223 at 275.622 kb on + strand, within Rru_A0223 at 275.622 kb on + strand, within Rru_A0223 at 275.623 kb on - strand, within Rru_A0223 at 275.623 kb on - strand, within Rru_A0223 at 275.647 kb on + strand, within Rru_A0223 at 275.647 kb on + strand, within Rru_A0223 at 275.648 kb on - strand, within Rru_A0223 at 275.880 kb on + strand, within Rru_A0223 at 275.881 kb on - strand, within Rru_A0223 at 275.881 kb on - strand, within Rru_A0223 at 275.881 kb on - strand, within Rru_A0223 at 275.908 kb on + strand, within Rru_A0223 at 275.908 kb on + strand, within Rru_A0223 at 275.908 kb on + strand, within Rru_A0223 at 275.908 kb on + strand, within Rru_A0223 at 275.909 kb on - strand, within Rru_A0223 at 275.909 kb on - strand, within Rru_A0223 at 276.118 kb on + strand, within Rru_A0223 at 276.118 kb on + strand, within Rru_A0223 at 276.119 kb on - strand, within Rru_A0223 at 276.119 kb on - strand, within Rru_A0223 at 276.142 kb on - strand, within Rru_A0223 at 276.217 kb on + strand, within Rru_A0223 at 276.218 kb on - strand, within Rru_A0223 at 276.218 kb on - strand, within Rru_A0223 at 276.218 kb on - strand, within Rru_A0223 at 276.218 kb on - strand, within Rru_A0223 at 276.247 kb on + strand, within Rru_A0223 at 276.248 kb on - strand, within Rru_A0223 at 276.249 kb on + strand, within Rru_A0223 at 276.386 kb on + strand, within Rru_A0223 at 276.387 kb on - strand, within Rru_A0223 at 276.427 kb on + strand, within Rru_A0223 at 276.428 kb on - strand, within Rru_A0223 at 276.428 kb on - strand, within Rru_A0223 at 276.474 kb on - strand at 276.474 kb on - strand at 276.601 kb on + strand at 276.602 kb on - strand at 276.602 kb on - strand at 276.622 kb on + strand at 276.679 kb on + strand at 276.680 kb on - strand at 276.797 kb on - strand, within Rru_A0224 at 276.799 kb on + strand, within Rru_A0224 at 277.192 kb on + strand, within Rru_A0224 at 277.193 kb on - strand, within Rru_A0224 at 277.276 kb on + strand, within Rru_A0224 at 277.495 kb on + strand, within Rru_A0224 at 277.496 kb on - strand, within Rru_A0224
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 274,567 - -0.0 274,949 + -2.2 274,949 + -0.0 274,949 + -0.0 274,949 + -0.0 274,949 + -0.0 274,950 - -2.2 274,950 - -0.0 274,950 - -0.0 274,950 - -0.9 274,993 - -1.6 274,993 - -0.0 275,145 + -0.0 275,145 + -0.0 275,145 + -0.0 275,218 + Rru_A0223 0.14 -0.0 275,219 - Rru_A0223 0.14 -0.0 275,439 + Rru_A0223 0.27 +0.1 275,440 - Rru_A0223 0.27 -0.0 275,485 - Rru_A0223 0.30 -0.0 275,554 + Rru_A0223 0.35 -0.0 275,554 + Rru_A0223 0.35 -3.1 275,554 + Rru_A0223 0.35 -1.0 275,555 - Rru_A0223 0.35 -0.0 275,622 + Rru_A0223 0.39 -0.0 275,622 + Rru_A0223 0.39 -0.0 275,622 + Rru_A0223 0.39 -2.5 275,623 - Rru_A0223 0.39 -1.0 275,623 - Rru_A0223 0.39 -0.0 275,647 + Rru_A0223 0.40 -0.0 275,647 + Rru_A0223 0.40 -0.0 275,648 - Rru_A0223 0.40 -0.0 275,880 + Rru_A0223 0.55 -0.0 275,881 - Rru_A0223 0.55 -0.0 275,881 - Rru_A0223 0.55 -0.0 275,881 - Rru_A0223 0.55 -0.0 275,908 + Rru_A0223 0.57 -0.0 275,908 + Rru_A0223 0.57 -0.0 275,908 + Rru_A0223 0.57 -0.0 275,908 + Rru_A0223 0.57 -0.0 275,909 - Rru_A0223 0.57 -0.0 275,909 - Rru_A0223 0.57 -0.0 276,118 + Rru_A0223 0.70 -1.2 276,118 + Rru_A0223 0.70 -1.2 276,119 - Rru_A0223 0.70 -0.0 276,119 - Rru_A0223 0.70 -0.0 276,142 - Rru_A0223 0.71 -0.0 276,217 + Rru_A0223 0.76 -1.1 276,218 - Rru_A0223 0.76 -1.0 276,218 - Rru_A0223 0.76 -0.0 276,218 - Rru_A0223 0.76 -0.0 276,218 - Rru_A0223 0.76 -0.0 276,247 + Rru_A0223 0.78 -0.0 276,248 - Rru_A0223 0.78 -0.0 276,249 + Rru_A0223 0.78 -0.0 276,386 + Rru_A0223 0.86 -0.0 276,387 - Rru_A0223 0.86 -0.0 276,427 + Rru_A0223 0.89 -2.0 276,428 - Rru_A0223 0.89 -1.7 276,428 - Rru_A0223 0.89 -0.0 276,474 - -0.0 276,474 - -0.0 276,601 + -0.0 276,602 - -0.0 276,602 - -0.0 276,622 + -0.0 276,679 + -0.0 276,680 - -0.0 276,797 - Rru_A0224 0.18 -0.0 276,799 + Rru_A0224 0.18 -0.0 277,192 + Rru_A0224 0.59 -0.0 277,193 - Rru_A0224 0.59 -0.0 277,276 + Rru_A0224 0.67 -0.0 277,495 + Rru_A0224 0.90 -0.0 277,496 - Rru_A0224 0.90 -0.0
Or see this region's nucleotide sequence