Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0136

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0134 and Rru_A0135 are separated by 59 nucleotidesRru_A0135 and Rru_A0136 are separated by 118 nucleotidesRru_A0136 and Rru_A0137 are separated by 188 nucleotides Rru_A0134: Rru_A0134 - Succinic semialdehyde dehydrogenase (NCBI), at 157,179 to 158,666 _A0134 Rru_A0135: Rru_A0135 - molybdenum ABC transporter ATP-binding protein (NCBI), at 158,726 to 159,301 _A0135 Rru_A0136: Rru_A0136 - Protein of unknown function DUF6, transmembrane (NCBI), at 159,420 to 160,346 _A0136 Rru_A0137: Rru_A0137 - TRAP transporter solute receptor, TAXI family (NCBI), at 160,535 to 161,587 _A0137 Position (kb) 159 160 161Strain fitness (log2 ratio) -2 -1 0 1at 158.463 kb on + strand, within Rru_A0134at 158.464 kb on - strand, within Rru_A0134at 158.464 kb on - strand, within Rru_A0134at 158.464 kb on - strand, within Rru_A0134at 158.512 kb on + strand, within Rru_A0134at 158.512 kb on + strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.643 kb on + strandat 158.643 kb on + strandat 158.643 kb on + strandat 158.643 kb on + strandat 158.643 kb on + strandat 158.644 kb on - strandat 158.644 kb on - strandat 158.644 kb on - strandat 159.076 kb on - strand, within Rru_A0135at 159.085 kb on + strand, within Rru_A0135at 159.185 kb on + strand, within Rru_A0135at 159.185 kb on + strand, within Rru_A0135at 159.185 kb on + strand, within Rru_A0135at 159.186 kb on - strand, within Rru_A0135at 159.189 kb on + strand, within Rru_A0135at 159.189 kb on + strand, within Rru_A0135at 159.190 kb on - strand, within Rru_A0135at 159.304 kb on + strandat 159.304 kb on + strandat 159.305 kb on - strandat 159.305 kb on - strandat 159.305 kb on - strandat 159.343 kb on + strandat 159.678 kb on + strand, within Rru_A0136at 159.963 kb on + strand, within Rru_A0136at 159.963 kb on + strand, within Rru_A0136at 160.055 kb on + strand, within Rru_A0136at 160.055 kb on + strand, within Rru_A0136at 160.055 kb on + strand, within Rru_A0136at 160.055 kb on + strand, within Rru_A0136at 160.056 kb on - strand, within Rru_A0136at 160.056 kb on - strand, within Rru_A0136at 160.056 kb on - strand, within Rru_A0136at 160.200 kb on + strand, within Rru_A0136at 160.200 kb on + strand, within Rru_A0136at 160.200 kb on + strand, within Rru_A0136at 160.201 kb on - strand, within Rru_A0136at 160.405 kb on + strandat 160.405 kb on + strandat 160.406 kb on - strandat 160.406 kb on - strandat 160.412 kb on + strandat 160.413 kb on - strandat 160.685 kb on + strand, within Rru_A0137at 160.686 kb on - strand, within Rru_A0137at 160.686 kb on - strand, within Rru_A0137at 160.816 kb on + strand, within Rru_A0137at 160.816 kb on + strand, within Rru_A0137at 160.887 kb on - strand, within Rru_A0137at 160.887 kb on - strand, within Rru_A0137at 160.887 kb on - strand, within Rru_A0137at 160.888 kb on + strand, within Rru_A0137at 160.888 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.951 kb on + strand, within Rru_A0137at 160.952 kb on - strand, within Rru_A0137at 160.952 kb on - strand, within Rru_A0137at 160.952 kb on - strand, within Rru_A0137at 161.321 kb on + strand, within Rru_A0137at 161.321 kb on + strand, within Rru_A0137at 161.322 kb on - strand, within Rru_A0137at 161.322 kb on - strand, within Rru_A0137

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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158,463 + Rru_A0134 0.86 -1.5
158,464 - Rru_A0134 0.86 -0.0
158,464 - Rru_A0134 0.86 -1.8
158,464 - Rru_A0134 0.86 -0.0
158,512 + Rru_A0134 0.90 -0.0
158,512 + Rru_A0134 0.90 -0.0
158,513 - Rru_A0134 0.90 -1.7
158,513 - Rru_A0134 0.90 -1.1
158,513 - Rru_A0134 0.90 -1.0
158,513 - Rru_A0134 0.90 -0.0
158,643 + -1.6
158,643 + -0.0
158,643 + -1.4
158,643 + -0.0
158,643 + -0.0
158,644 - -1.5
158,644 - -0.0
158,644 - -0.0
159,076 - Rru_A0135 0.61 -2.3
159,085 + Rru_A0135 0.62 -1.5
159,185 + Rru_A0135 0.80 -0.0
159,185 + Rru_A0135 0.80 -1.0
159,185 + Rru_A0135 0.80 -0.9
159,186 - Rru_A0135 0.80 -0.0
159,189 + Rru_A0135 0.80 +1.0
159,189 + Rru_A0135 0.80 -0.0
159,190 - Rru_A0135 0.81 -0.0
159,304 + -1.0
159,304 + -0.0
159,305 - -0.0
159,305 - -0.0
159,305 - -0.0
159,343 + -1.0
159,678 + Rru_A0136 0.28 -0.0
159,963 + Rru_A0136 0.59 -0.0
159,963 + Rru_A0136 0.59 -0.0
160,055 + Rru_A0136 0.69 -1.3
160,055 + Rru_A0136 0.69 -2.3
160,055 + Rru_A0136 0.69 -0.5
160,055 + Rru_A0136 0.69 -0.0
160,056 - Rru_A0136 0.69 -0.0
160,056 - Rru_A0136 0.69 -0.0
160,056 - Rru_A0136 0.69 -0.0
160,200 + Rru_A0136 0.84 -2.3
160,200 + Rru_A0136 0.84 -0.0
160,200 + Rru_A0136 0.84 -1.5
160,201 - Rru_A0136 0.84 -1.0
160,405 + -0.9
160,405 + -0.0
160,406 - -0.0
160,406 - -2.0
160,412 + -0.0
160,413 - -0.0
160,685 + Rru_A0137 0.14 -0.0
160,686 - Rru_A0137 0.14 -2.2
160,686 - Rru_A0137 0.14 -0.0
160,816 + Rru_A0137 0.27 -0.0
160,816 + Rru_A0137 0.27 -0.0
160,887 - Rru_A0137 0.33 -0.0
160,887 - Rru_A0137 0.33 -0.0
160,887 - Rru_A0137 0.33 -0.0
160,888 + Rru_A0137 0.34 -0.0
160,888 + Rru_A0137 0.34 -0.0
160,949 + Rru_A0137 0.39 -2.1
160,949 + Rru_A0137 0.39 -2.1
160,949 + Rru_A0137 0.39 -0.0
160,949 + Rru_A0137 0.39 -0.6
160,950 - Rru_A0137 0.39 -0.0
160,950 - Rru_A0137 0.39 -0.0
160,950 - Rru_A0137 0.39 -0.0
160,950 - Rru_A0137 0.39 -0.9
160,951 + Rru_A0137 0.40 -0.0
160,952 - Rru_A0137 0.40 -0.0
160,952 - Rru_A0137 0.40 -0.0
160,952 - Rru_A0137 0.40 -0.0
161,321 + Rru_A0137 0.75 -0.0
161,321 + Rru_A0137 0.75 -0.0
161,322 - Rru_A0137 0.75 -0.0
161,322 - Rru_A0137 0.75 -1.7

Or see this region's nucleotide sequence