Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0129 and Rru_AR0003 are separated by 225 nucleotides Rru_AR0003 and Rru_A0130 are separated by 136 nucleotides Rru_A0130 and Rru_A0131 are separated by 246 nucleotides
Rru_A0129: Rru_A0129 - hypothetical protein (NCBI), at 149,921 to 151,015
_A0129
Rru_AR0003: Rru_AR0003 - tRNA-Arg (NCBI), at 151,241 to 151,317
_AR0003
Rru_A0130: Rru_A0130 - chemotaxis sensory transducer (NCBI), at 151,454 to 152,929
_A0130
Rru_A0131: Rru_A0131 - Response regulator receiver (CheY) and unknown domain protein (NCBI), at 153,176 to 154,189
_A0131
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.843 kb on + strand, within Rru_A0129 at 151.175 kb on + strand at 151.220 kb on + strand at 151.456 kb on - strand at 151.456 kb on - strand at 151.460 kb on + strand at 151.460 kb on + strand at 151.549 kb on + strand at 151.549 kb on + strand at 151.550 kb on - strand at 151.550 kb on - strand at 152.139 kb on + strand, within Rru_A0130 at 152.140 kb on - strand, within Rru_A0130 at 152.140 kb on - strand, within Rru_A0130 at 152.535 kb on + strand, within Rru_A0130 at 152.562 kb on + strand, within Rru_A0130 at 152.562 kb on + strand, within Rru_A0130 at 152.563 kb on - strand, within Rru_A0130 at 152.563 kb on - strand, within Rru_A0130 at 152.574 kb on + strand, within Rru_A0130 at 152.993 kb on + strand at 152.993 kb on + strand at 153.020 kb on + strand at 153.020 kb on + strand at 153.020 kb on + strand at 153.020 kb on + strand at 153.021 kb on - strand at 153.021 kb on - strand at 153.022 kb on + strand at 153.022 kb on + strand at 153.022 kb on + strand at 153.023 kb on - strand at 153.032 kb on + strand at 153.043 kb on + strand at 153.057 kb on + strand at 153.057 kb on + strand at 153.058 kb on - strand at 153.069 kb on + strand at 153.138 kb on + strand at 153.138 kb on + strand at 153.138 kb on + strand at 153.138 kb on + strand at 153.139 kb on - strand at 153.139 kb on - strand at 153.139 kb on - strand at 153.139 kb on - strand at 153.151 kb on - strand at 153.151 kb on - strand at 153.151 kb on - strand at 153.151 kb on - strand at 153.347 kb on + strand, within Rru_A0131 at 153.347 kb on + strand, within Rru_A0131 at 153.347 kb on + strand, within Rru_A0131 at 153.347 kb on + strand, within Rru_A0131 at 153.348 kb on - strand, within Rru_A0131 at 153.356 kb on + strand, within Rru_A0131 at 153.507 kb on + strand, within Rru_A0131 at 153.507 kb on + strand, within Rru_A0131 at 153.507 kb on + strand, within Rru_A0131 at 153.508 kb on - strand, within Rru_A0131 at 153.508 kb on - strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.573 kb on - strand, within Rru_A0131 at 153.639 kb on - strand, within Rru_A0131 at 153.710 kb on + strand, within Rru_A0131 at 153.710 kb on + strand, within Rru_A0131 at 153.711 kb on - strand, within Rru_A0131 at 153.875 kb on + strand, within Rru_A0131 at 153.875 kb on + strand, within Rru_A0131 at 153.875 kb on + strand, within Rru_A0131
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 150,843 + Rru_A0129 0.84 -0.1 151,175 + -0.0 151,220 + -0.0 151,456 - -0.0 151,456 - -1.2 151,460 + -1.0 151,460 + -0.0 151,549 + -0.0 151,549 + -1.0 151,550 - -0.7 151,550 - -0.0 152,139 + Rru_A0130 0.46 -1.4 152,140 - Rru_A0130 0.46 -0.0 152,140 - Rru_A0130 0.46 -1.0 152,535 + Rru_A0130 0.73 -0.0 152,562 + Rru_A0130 0.75 -1.6 152,562 + Rru_A0130 0.75 -1.3 152,563 - Rru_A0130 0.75 -1.0 152,563 - Rru_A0130 0.75 -0.0 152,574 + Rru_A0130 0.76 -1.4 152,993 + -1.0 152,993 + -0.0 153,020 + -0.0 153,020 + -0.0 153,020 + -1.6 153,020 + -1.7 153,021 - -0.4 153,021 - -1.6 153,022 + -0.0 153,022 + -0.0 153,022 + -0.0 153,023 - -0.0 153,032 + -0.0 153,043 + -0.0 153,057 + -0.0 153,057 + -0.0 153,058 - -0.0 153,069 + -2.0 153,138 + -0.0 153,138 + -0.9 153,138 + -0.0 153,138 + -0.4 153,139 - -2.4 153,139 - -0.0 153,139 - -0.0 153,139 - -0.0 153,151 - -0.0 153,151 - -2.6 153,151 - -0.0 153,151 - -0.0 153,347 + Rru_A0131 0.17 -0.0 153,347 + Rru_A0131 0.17 -1.0 153,347 + Rru_A0131 0.17 -0.0 153,347 + Rru_A0131 0.17 -0.0 153,348 - Rru_A0131 0.17 -0.0 153,356 + Rru_A0131 0.18 -0.0 153,507 + Rru_A0131 0.33 -0.0 153,507 + Rru_A0131 0.33 -0.0 153,507 + Rru_A0131 0.33 -0.0 153,508 - Rru_A0131 0.33 -0.0 153,508 - Rru_A0131 0.33 -0.0 153,557 + Rru_A0131 0.38 -0.0 153,557 + Rru_A0131 0.38 -0.8 153,557 + Rru_A0131 0.38 -0.0 153,557 + Rru_A0131 0.38 -0.6 153,558 - Rru_A0131 0.38 -0.0 153,558 - Rru_A0131 0.38 +0.2 153,558 - Rru_A0131 0.38 +2.4 153,558 - Rru_A0131 0.38 -2.8 153,558 - Rru_A0131 0.38 -0.0 153,573 - Rru_A0131 0.39 -0.0 153,639 - Rru_A0131 0.46 -0.0 153,710 + Rru_A0131 0.53 -0.0 153,710 + Rru_A0131 0.53 -0.5 153,711 - Rru_A0131 0.53 -0.0 153,875 + Rru_A0131 0.69 -0.0 153,875 + Rru_A0131 0.69 -0.0 153,875 + Rru_A0131 0.69 -1.0
Or see this region's nucleotide sequence