Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0095 and Rru_A0096 are separated by 10 nucleotides Rru_A0096 and Rru_A0097 are separated by 156 nucleotides Rru_A0097 and Rru_A0098 are separated by 56 nucleotides
Rru_A0095: Rru_A0095 - ABC transporter component (NCBI), at 109,007 to 110,125
_A0095
Rru_A0096: Rru_A0096 - Secretion protein HlyD (NCBI), at 110,136 to 111,101
_A0096
Rru_A0097: Rru_A0097 - Class I peptide chain release factor (NCBI), at 111,258 to 111,680
_A0097
Rru_A0098: Rru_A0098 - Cystathionine gamma-synthase (NCBI), at 111,737 to 112,948
_A0098
Position (kb) 110
111
112 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 109.256 kb on + strand, within Rru_A0095 at 109.256 kb on + strand, within Rru_A0095 at 109.256 kb on + strand, within Rru_A0095 at 109.257 kb on - strand, within Rru_A0095 at 109.257 kb on - strand, within Rru_A0095 at 109.571 kb on + strand, within Rru_A0095 at 109.571 kb on + strand, within Rru_A0095 at 109.571 kb on + strand, within Rru_A0095 at 109.571 kb on + strand, within Rru_A0095 at 109.571 kb on + strand, within Rru_A0095 at 109.571 kb on + strand, within Rru_A0095 at 109.572 kb on - strand, within Rru_A0095 at 109.572 kb on - strand, within Rru_A0095 at 109.649 kb on + strand, within Rru_A0095 at 109.649 kb on + strand, within Rru_A0095 at 109.649 kb on + strand, within Rru_A0095 at 109.649 kb on + strand, within Rru_A0095 at 109.649 kb on + strand, within Rru_A0095 at 109.649 kb on + strand, within Rru_A0095 at 109.650 kb on - strand, within Rru_A0095 at 109.671 kb on - strand, within Rru_A0095 at 109.671 kb on - strand, within Rru_A0095 at 109.883 kb on + strand, within Rru_A0095 at 109.883 kb on + strand, within Rru_A0095 at 109.884 kb on - strand, within Rru_A0095 at 109.948 kb on + strand, within Rru_A0095 at 109.948 kb on + strand, within Rru_A0095 at 109.948 kb on + strand, within Rru_A0095 at 109.948 kb on + strand, within Rru_A0095 at 110.078 kb on - strand at 110.078 kb on - strand at 110.138 kb on - strand at 110.138 kb on - strand at 110.232 kb on + strand at 110.232 kb on + strand at 110.233 kb on - strand, within Rru_A0096 at 110.425 kb on - strand, within Rru_A0096 at 110.580 kb on + strand, within Rru_A0096 at 110.580 kb on + strand, within Rru_A0096 at 110.580 kb on + strand, within Rru_A0096 at 110.581 kb on - strand, within Rru_A0096 at 111.186 kb on + strand at 111.187 kb on - strand at 111.187 kb on - strand at 111.187 kb on - strand at 111.260 kb on - strand at 111.534 kb on + strand, within Rru_A0097 at 111.582 kb on + strand, within Rru_A0097 at 111.583 kb on - strand, within Rru_A0097 at 111.691 kb on + strand at 111.692 kb on - strand at 111.692 kb on - strand at 111.692 kb on - strand at 111.738 kb on + strand at 111.738 kb on + strand at 111.835 kb on - strand at 111.897 kb on + strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.936 kb on + strand, within Rru_A0098 at 111.936 kb on + strand, within Rru_A0098 at 111.937 kb on - strand, within Rru_A0098
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 109,256 + Rru_A0095 0.22 -0.8 109,256 + Rru_A0095 0.22 -0.0 109,256 + Rru_A0095 0.22 -0.0 109,257 - Rru_A0095 0.22 -0.0 109,257 - Rru_A0095 0.22 -0.0 109,571 + Rru_A0095 0.50 -0.0 109,571 + Rru_A0095 0.50 -0.0 109,571 + Rru_A0095 0.50 -0.0 109,571 + Rru_A0095 0.50 -0.0 109,571 + Rru_A0095 0.50 -0.0 109,571 + Rru_A0095 0.50 -0.0 109,572 - Rru_A0095 0.50 -0.0 109,572 - Rru_A0095 0.50 -0.0 109,649 + Rru_A0095 0.57 -0.0 109,649 + Rru_A0095 0.57 -0.0 109,649 + Rru_A0095 0.57 -0.0 109,649 + Rru_A0095 0.57 -0.0 109,649 + Rru_A0095 0.57 -0.0 109,649 + Rru_A0095 0.57 -0.0 109,650 - Rru_A0095 0.57 -1.0 109,671 - Rru_A0095 0.59 -2.1 109,671 - Rru_A0095 0.59 -2.7 109,883 + Rru_A0095 0.78 +0.2 109,883 + Rru_A0095 0.78 -0.0 109,884 - Rru_A0095 0.78 -0.0 109,948 + Rru_A0095 0.84 -1.6 109,948 + Rru_A0095 0.84 -0.0 109,948 + Rru_A0095 0.84 -0.0 109,948 + Rru_A0095 0.84 -0.5 110,078 - -2.2 110,078 - -1.0 110,138 - +0.7 110,138 - -1.0 110,232 + -0.0 110,232 + -1.0 110,233 - Rru_A0096 0.10 -0.0 110,425 - Rru_A0096 0.30 -0.0 110,580 + Rru_A0096 0.46 -0.0 110,580 + Rru_A0096 0.46 -0.0 110,580 + Rru_A0096 0.46 -3.3 110,581 - Rru_A0096 0.46 -0.0 111,186 + -0.0 111,187 - -0.0 111,187 - +0.2 111,187 - -0.0 111,260 - -0.0 111,534 + Rru_A0097 0.65 -0.6 111,582 + Rru_A0097 0.77 -0.0 111,583 - Rru_A0097 0.77 -1.6 111,691 + -0.0 111,692 - -0.0 111,692 - -1.0 111,692 - -2.3 111,738 + -0.0 111,738 + -0.0 111,835 - -0.0 111,897 + Rru_A0098 0.13 -0.0 111,898 - Rru_A0098 0.13 -0.0 111,898 - Rru_A0098 0.13 -0.0 111,898 - Rru_A0098 0.13 -0.0 111,898 - Rru_A0098 0.13 -2.0 111,898 - Rru_A0098 0.13 -0.0 111,898 - Rru_A0098 0.13 -1.0 111,936 + Rru_A0098 0.16 -1.1 111,936 + Rru_A0098 0.16 -0.0 111,937 - Rru_A0098 0.17 -0.0
Or see this region's nucleotide sequence