Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0040 and Rru_B0041 are separated by 147 nucleotides Rru_B0041 and Rru_B0042 are separated by 34 nucleotides Rru_B0042 and Rru_B0043 are separated by 103 nucleotides Rru_B0043 and Rru_B0044 are separated by 59 nucleotides
Rru_B0040: Rru_B0040 - Type I secretion membrane fusion protein, HlyD (NCBI), at 40,773 to 42,251
_B0040
Rru_B0041: Rru_B0041 - Transcriptional Regulator, XRE family (NCBI), at 42,399 to 42,710
_B0041
Rru_B0042: Rru_B0042 - hypothetical protein (NCBI), at 42,745 to 43,599
_B0042
Rru_B0043: Rru_B0043 - hypothetical protein (NCBI), at 43,703 to 44,356
_B0043
Rru_B0044: Rru_B0044 - Glycosyl transferase, family 2 (NCBI), at 44,416 to 46,656
_B0044
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.846 kb on + strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 42.069 kb on - strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.199 kb on - strand at 42.199 kb on - strand at 42.199 kb on - strand at 42.249 kb on + strand at 42.249 kb on + strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.309 kb on + strand at 42.310 kb on - strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.319 kb on - strand at 42.319 kb on - strand at 42.319 kb on - strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.326 kb on + strand at 42.326 kb on + strand at 42.327 kb on - strand at 42.327 kb on - strand at 42.369 kb on + strand at 42.402 kb on + strand at 42.402 kb on + strand at 42.403 kb on - strand at 42.403 kb on - strand at 42.534 kb on + strand, within Rru_B0041 at 42.537 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.658 kb on - strand, within Rru_B0041 at 42.672 kb on + strand, within Rru_B0041 at 42.672 kb on + strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.708 kb on + strand at 42.709 kb on - strand at 42.709 kb on - strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.838 kb on + strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 43.409 kb on + strand, within Rru_B0042 at 43.409 kb on + strand, within Rru_B0042 at 43.409 kb on + strand, within Rru_B0042 at 43.410 kb on - strand, within Rru_B0042 at 43.541 kb on + strand at 43.542 kb on - strand at 43.817 kb on - strand, within Rru_B0043 at 44.035 kb on + strand, within Rru_B0043 at 44.036 kb on - strand, within Rru_B0043 at 44.036 kb on - strand, within Rru_B0043 at 44.036 kb on - strand, within Rru_B0043 at 44.109 kb on + strand, within Rru_B0043 at 44.165 kb on + strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.311 kb on + strand at 44.311 kb on + strand at 44.312 kb on - strand at 44.312 kb on - strand at 44.312 kb on - strand at 44.312 kb on - strand at 44.354 kb on + strand at 44.355 kb on - strand at 44.355 kb on - strand at 44.474 kb on - strand at 44.474 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 41,846 + Rru_B0040 0.73 -2.3 41,846 + Rru_B0040 0.73 -1.8 41,846 + Rru_B0040 0.73 -0.1 42,069 - Rru_B0040 0.88 -0.1 42,078 + Rru_B0040 0.88 -0.1 42,078 + Rru_B0040 0.88 -0.1 42,078 + Rru_B0040 0.88 -2.3 42,078 + Rru_B0040 0.88 -0.1 42,078 + Rru_B0040 0.88 -2.0 42,079 - Rru_B0040 0.88 -1.7 42,079 - Rru_B0040 0.88 -0.1 42,079 - Rru_B0040 0.88 -2.3 42,079 - Rru_B0040 0.88 -0.1 42,081 + Rru_B0040 0.88 -1.9 42,081 + Rru_B0040 0.88 -0.1 42,081 + Rru_B0040 0.88 -1.7 42,081 + Rru_B0040 0.88 -0.1 42,081 + Rru_B0040 0.88 -1.8 42,081 + Rru_B0040 0.88 -0.1 42,081 + Rru_B0040 0.88 -0.1 42,082 - Rru_B0040 0.89 -1.9 42,082 - Rru_B0040 0.89 -1.7 42,082 - Rru_B0040 0.89 -1.6 42,082 - Rru_B0040 0.89 -2.4 42,082 - Rru_B0040 0.89 -0.1 42,082 - Rru_B0040 0.89 -2.0 42,199 - -1.6 42,199 - -2.1 42,199 - -0.1 42,249 + -0.1 42,249 + -0.1 42,250 - -0.1 42,250 - -0.7 42,250 - -0.4 42,250 - -0.1 42,309 + -1.6 42,310 - -1.1 42,318 + -0.1 42,318 + -0.1 42,318 + -0.1 42,318 + -0.1 42,319 - -1.4 42,319 - -0.1 42,319 - -0.1 42,321 + -1.1 42,321 + -0.1 42,321 + -0.1 42,322 - -1.4 42,322 - -0.1 42,326 + -0.1 42,326 + -0.1 42,327 - -0.1 42,327 - -0.1 42,369 + -1.7 42,402 + -0.1 42,402 + -0.1 42,403 - -0.1 42,403 - -0.1 42,534 + Rru_B0041 0.43 -2.9 42,537 + Rru_B0041 0.44 -0.2 42,657 + Rru_B0041 0.83 -0.1 42,657 + Rru_B0041 0.83 -0.1 42,657 + Rru_B0041 0.83 -0.1 42,658 - Rru_B0041 0.83 -0.1 42,672 + Rru_B0041 0.88 -0.1 42,672 + Rru_B0041 0.88 -0.1 42,673 - Rru_B0041 0.88 -1.1 42,673 - Rru_B0041 0.88 -0.1 42,673 - Rru_B0041 0.88 -0.5 42,673 - Rru_B0041 0.88 -1.1 42,708 + -1.1 42,709 - -1.7 42,709 - -0.1 42,727 + -0.1 42,727 + -0.1 42,727 + -0.1 42,727 + -0.1 42,727 + -0.1 42,727 + -0.1 42,728 - -1.4 42,728 - -0.1 42,728 - -0.1 42,728 - -1.7 42,728 - -1.1 42,728 - -0.1 42,728 - -0.1 42,728 - -1.1 42,728 - +1.9 42,728 - -1.4 42,728 - -1.5 42,728 - -0.1 42,728 - -0.1 42,838 + Rru_B0042 0.11 -1.1 42,839 - Rru_B0042 0.11 -2.5 42,839 - Rru_B0042 0.11 -0.1 42,839 - Rru_B0042 0.11 -0.1 42,928 + Rru_B0042 0.21 -0.1 42,928 + Rru_B0042 0.21 -0.1 42,928 + Rru_B0042 0.21 -0.1 42,928 + Rru_B0042 0.21 -0.1 42,928 + Rru_B0042 0.21 -0.1 42,928 + Rru_B0042 0.21 -0.1 42,929 - Rru_B0042 0.22 -0.1 42,929 - Rru_B0042 0.22 -0.1 42,929 - Rru_B0042 0.22 -3.1 42,929 - Rru_B0042 0.22 -0.1 43,409 + Rru_B0042 0.78 -0.1 43,409 + Rru_B0042 0.78 -0.1 43,409 + Rru_B0042 0.78 -0.1 43,410 - Rru_B0042 0.78 -0.1 43,541 + -0.1 43,542 - -1.9 43,817 - Rru_B0043 0.17 -1.1 44,035 + Rru_B0043 0.51 -0.1 44,036 - Rru_B0043 0.51 -1.1 44,036 - Rru_B0043 0.51 -0.1 44,036 - Rru_B0043 0.51 -0.1 44,109 + Rru_B0043 0.62 -0.1 44,165 + Rru_B0043 0.71 -0.1 44,166 - Rru_B0043 0.71 -0.1 44,166 - Rru_B0043 0.71 -0.1 44,166 - Rru_B0043 0.71 -0.1 44,166 - Rru_B0043 0.71 -0.1 44,166 - Rru_B0043 0.71 -2.1 44,166 - Rru_B0043 0.71 -0.1 44,311 + -0.1 44,311 + -0.1 44,312 - -1.1 44,312 - -0.1 44,312 - -0.1 44,312 - -1.8 44,354 + -0.1 44,355 - -0.1 44,355 - -0.1 44,474 - -0.1 44,474 - -1.1
Or see this region's nucleotide sequence