Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0006

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0005 and Rru_B0006 are separated by 69 nucleotidesRru_B0006 and Rru_B0007 are separated by 6 nucleotides Rru_B0005: Rru_B0005 - Glycosyl transferase (NCBI), at 3,063 to 5,189 _B0005 Rru_B0006: Rru_B0006 - NAD-dependent epimerase/dehydratase (NCBI), at 5,259 to 6,218 _B0006 Rru_B0007: Rru_B0007 - Glycosyl transferase, group 1 (NCBI), at 6,225 to 9,935 _B0007 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1at 4.955 kb on + strand, within Rru_B0005at 5.134 kb on + strandat 6.613 kb on - strand, within Rru_B0007at 6.734 kb on - strand, within Rru_B0007at 7.083 kb on - strand, within Rru_B0007at 7.128 kb on - strand, within Rru_B0007at 7.149 kb on - strand, within Rru_B0007at 7.197 kb on - strand, within Rru_B0007at 7.215 kb on - strand, within Rru_B0007

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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4,955 + Rru_B0005 0.89 -2.7
5,134 + -0.1
6,613 - Rru_B0007 0.10 -1.5
6,734 - Rru_B0007 0.14 -0.1
7,083 - Rru_B0007 0.23 -1.0
7,128 - Rru_B0007 0.24 -1.1
7,149 - Rru_B0007 0.25 -0.1
7,197 - Rru_B0007 0.26 -1.0
7,215 - Rru_B0007 0.27 -0.1

Or see this region's nucleotide sequence