Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1848

Experiment: Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1846 and Ga0059261_1847 are separated by 61 nucleotidesGa0059261_1847 and Ga0059261_1848 are separated by 103 nucleotidesGa0059261_1848 and Ga0059261_1849 are separated by 138 nucleotides Ga0059261_1846: Ga0059261_1846 - Xaa-Pro aminopeptidase, at 1,954,643 to 1,956,445 _1846 Ga0059261_1847: Ga0059261_1847 - hypothetical protein, at 1,956,507 to 1,956,632 _1847 Ga0059261_1848: Ga0059261_1848 - tRNA, at 1,956,736 to 1,956,810 _1848 Ga0059261_1849: Ga0059261_1849 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 1,956,949 to 1,958,364 _1849 Position (kb) 1956 1957Strain fitness (log2 ratio) -3 -2 -1 0 1at 1955.768 kb on + strandat 1955.768 kb on + strand, within Ga0059261_1846at 1955.768 kb on + strand, within Ga0059261_1846at 1955.768 kb on + strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.769 kb on - strand, within Ga0059261_1846at 1955.816 kb on + strand, within Ga0059261_1846at 1955.817 kb on - strand, within Ga0059261_1846at 1955.817 kb on - strand, within Ga0059261_1846at 1955.817 kb on - strand, within Ga0059261_1846at 1955.817 kb on - strand, within Ga0059261_1846at 1955.840 kb on + strandat 1956.029 kb on + strand, within Ga0059261_1846at 1956.029 kb on + strand, within Ga0059261_1846at 1956.062 kb on + strand, within Ga0059261_1846at 1956.062 kb on + strand, within Ga0059261_1846at 1956.173 kb on + strand, within Ga0059261_1846at 1956.173 kb on + strand, within Ga0059261_1846at 1956.173 kb on + strand, within Ga0059261_1846at 1956.173 kb on + strandat 1956.173 kb on + strand, within Ga0059261_1846at 1956.174 kb on - strand, within Ga0059261_1846at 1956.174 kb on - strandat 1956.174 kb on - strand, within Ga0059261_1846at 1956.174 kb on - strand, within Ga0059261_1846at 1956.174 kb on - strand, within Ga0059261_1846at 1956.216 kb on + strand, within Ga0059261_1846at 1956.216 kb on + strand, within Ga0059261_1846at 1956.217 kb on - strand, within Ga0059261_1846at 1956.350 kb on + strandat 1956.350 kb on + strandat 1956.351 kb on - strandat 1956.443 kb on + strandat 1956.443 kb on + strandat 1956.443 kb on + strandat 1956.545 kb on + strand, within Ga0059261_1847at 1956.545 kb on + strand, within Ga0059261_1847at 1956.545 kb on + strand, within Ga0059261_1847at 1956.545 kb on + strand, within Ga0059261_1847at 1956.545 kb on + strand, within Ga0059261_1847at 1956.546 kb on - strand, within Ga0059261_1847at 1956.546 kb on - strand, within Ga0059261_1847at 1956.546 kb on - strand, within Ga0059261_1847at 1956.645 kb on + strandat 1956.646 kb on - strandat 1956.944 kb on + strandat 1956.945 kb on - strandat 1956.945 kb on - strandat 1956.945 kb on - strandat 1957.193 kb on + strand, within Ga0059261_1849at 1957.326 kb on + strand, within Ga0059261_1849at 1957.431 kb on - strand, within Ga0059261_1849

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.125 vol%
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1,955,768 + -0.6
1,955,768 + Ga0059261_1846 0.62 -1.4
1,955,768 + Ga0059261_1846 0.62 -0.9
1,955,768 + Ga0059261_1846 0.62 -0.7
1,955,769 - Ga0059261_1846 0.62 +1.0
1,955,769 - Ga0059261_1846 0.62 +0.1
1,955,769 - Ga0059261_1846 0.62 +0.2
1,955,769 - Ga0059261_1846 0.62 -2.2
1,955,769 - Ga0059261_1846 0.62 -1.6
1,955,769 - Ga0059261_1846 0.62 -1.0
1,955,769 - Ga0059261_1846 0.62 -2.7
1,955,816 + Ga0059261_1846 0.65 -3.2
1,955,817 - Ga0059261_1846 0.65 -0.9
1,955,817 - Ga0059261_1846 0.65 -0.9
1,955,817 - Ga0059261_1846 0.65 -1.7
1,955,817 - Ga0059261_1846 0.65 -0.6
1,955,840 + -0.0
1,956,029 + Ga0059261_1846 0.77 -2.0
1,956,029 + Ga0059261_1846 0.77 -3.0
1,956,062 + Ga0059261_1846 0.79 -0.7
1,956,062 + Ga0059261_1846 0.79 +0.4
1,956,173 + Ga0059261_1846 0.85 -1.9
1,956,173 + Ga0059261_1846 0.85 -2.4
1,956,173 + Ga0059261_1846 0.85 -0.9
1,956,173 + +1.5
1,956,173 + Ga0059261_1846 0.85 -1.0
1,956,174 - Ga0059261_1846 0.85 -1.9
1,956,174 - +1.4
1,956,174 - Ga0059261_1846 0.85 -1.6
1,956,174 - Ga0059261_1846 0.85 -0.6
1,956,174 - Ga0059261_1846 0.85 +0.2
1,956,216 + Ga0059261_1846 0.87 +0.2
1,956,216 + Ga0059261_1846 0.87 -2.2
1,956,217 - Ga0059261_1846 0.87 -3.4
1,956,350 + -0.0
1,956,350 + -1.0
1,956,351 - -2.4
1,956,443 + -0.7
1,956,443 + +1.5
1,956,443 + +0.2
1,956,545 + Ga0059261_1847 0.30 -1.0
1,956,545 + Ga0059261_1847 0.30 -0.4
1,956,545 + Ga0059261_1847 0.30 +0.6
1,956,545 + Ga0059261_1847 0.30 -0.0
1,956,545 + Ga0059261_1847 0.30 +1.3
1,956,546 - Ga0059261_1847 0.31 +0.0
1,956,546 - Ga0059261_1847 0.31 +0.3
1,956,546 - Ga0059261_1847 0.31 -0.3
1,956,645 + -0.3
1,956,646 - -0.1
1,956,944 + +0.3
1,956,945 - -0.7
1,956,945 - -0.7
1,956,945 - +0.6
1,957,193 + Ga0059261_1849 0.17 +0.2
1,957,326 + Ga0059261_1849 0.27 -0.2
1,957,431 - Ga0059261_1849 0.34 +0.5

Or see this region's nucleotide sequence