Experiment: PYE with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02253 and CCNA_03965 are separated by 55 nucleotides CCNA_03965 and CCNA_02254 are separated by 108 nucleotides
CCNA_02253: CCNA_02253 - hybrid CAP effector domain/patatin phospholipase protein, at 2,402,492 to 2,404,267
_02253
CCNA_03965: CCNA_03965 - hypothetical protein, at 2,404,323 to 2,404,409
_03965
CCNA_02254: CCNA_02254 - isovaleryl-CoA dehydrogenase, at 2,404,518 to 2,405,678
_02254
Position (kb)
2404
2405 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2403.398 kb on - strand, within CCNA_02253 at 2403.398 kb on - strand, within CCNA_02253 at 2403.448 kb on - strand, within CCNA_02253 at 2403.497 kb on + strand, within CCNA_02253 at 2403.534 kb on - strand, within CCNA_02253 at 2403.534 kb on - strand, within CCNA_02253 at 2403.577 kb on + strand, within CCNA_02253 at 2403.577 kb on + strand, within CCNA_02253 at 2403.642 kb on - strand, within CCNA_02253 at 2403.668 kb on + strand, within CCNA_02253 at 2403.676 kb on - strand, within CCNA_02253 at 2403.681 kb on - strand, within CCNA_02253 at 2403.731 kb on + strand, within CCNA_02253 at 2403.757 kb on + strand, within CCNA_02253 at 2403.764 kb on + strand, within CCNA_02253 at 2403.765 kb on - strand, within CCNA_02253 at 2403.817 kb on + strand, within CCNA_02253 at 2403.817 kb on + strand, within CCNA_02253 at 2403.818 kb on + strand, within CCNA_02253 at 2403.826 kb on - strand, within CCNA_02253 at 2403.891 kb on - strand, within CCNA_02253 at 2403.924 kb on + strand, within CCNA_02253 at 2403.956 kb on + strand, within CCNA_02253 at 2403.969 kb on - strand, within CCNA_02253 at 2403.988 kb on + strand, within CCNA_02253 at 2404.013 kb on + strand, within CCNA_02253 at 2404.041 kb on - strand, within CCNA_02253 at 2404.079 kb on + strand, within CCNA_02253 at 2404.079 kb on + strand, within CCNA_02253 at 2404.097 kb on - strand at 2404.173 kb on + strand at 2404.182 kb on + strand at 2404.187 kb on - strand at 2404.197 kb on + strand at 2404.243 kb on + strand at 2404.255 kb on - strand at 2404.270 kb on + strand at 2404.317 kb on - strand at 2404.322 kb on + strand at 2404.322 kb on + strand at 2404.343 kb on + strand, within CCNA_03965 at 2404.343 kb on + strand, within CCNA_03965 at 2404.518 kb on - strand at 2404.518 kb on - strand at 2404.518 kb on - strand at 2404.590 kb on - strand at 2404.629 kb on + strand at 2404.658 kb on - strand, within CCNA_02254 at 2404.659 kb on - strand, within CCNA_02254 at 2404.700 kb on - strand, within CCNA_02254 at 2404.736 kb on - strand, within CCNA_02254 at 2404.737 kb on - strand, within CCNA_02254 at 2404.749 kb on - strand, within CCNA_02254 at 2404.749 kb on - strand, within CCNA_02254 at 2404.815 kb on - strand, within CCNA_02254 at 2404.896 kb on - strand at 2405.096 kb on - strand, within CCNA_02254 at 2405.154 kb on - strand, within CCNA_02254 at 2405.159 kb on - strand at 2405.225 kb on + strand, within CCNA_02254 at 2405.263 kb on - strand, within CCNA_02254 at 2405.282 kb on + strand, within CCNA_02254 at 2405.378 kb on + strand, within CCNA_02254 at 2405.386 kb on - strand, within CCNA_02254 at 2405.397 kb on + strand, within CCNA_02254
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol% remove 2,403,398 - CCNA_02253 0.51 -0.2 2,403,398 - CCNA_02253 0.51 -1.7 2,403,448 - CCNA_02253 0.54 +1.6 2,403,497 + CCNA_02253 0.57 -0.3 2,403,534 - CCNA_02253 0.59 +0.2 2,403,534 - CCNA_02253 0.59 +0.9 2,403,577 + CCNA_02253 0.61 +0.2 2,403,577 + CCNA_02253 0.61 +1.2 2,403,642 - CCNA_02253 0.65 -2.8 2,403,668 + CCNA_02253 0.66 -2.1 2,403,676 - CCNA_02253 0.67 -0.4 2,403,681 - CCNA_02253 0.67 -1.4 2,403,731 + CCNA_02253 0.70 +0.2 2,403,757 + CCNA_02253 0.71 -0.7 2,403,764 + CCNA_02253 0.72 +0.8 2,403,765 - CCNA_02253 0.72 -3.1 2,403,817 + CCNA_02253 0.75 -0.0 2,403,817 + CCNA_02253 0.75 -1.8 2,403,818 + CCNA_02253 0.75 +0.4 2,403,826 - CCNA_02253 0.75 -1.0 2,403,891 - CCNA_02253 0.79 +0.3 2,403,924 + CCNA_02253 0.81 +1.6 2,403,956 + CCNA_02253 0.82 -2.2 2,403,969 - CCNA_02253 0.83 -1.2 2,403,988 + CCNA_02253 0.84 -0.9 2,404,013 + CCNA_02253 0.86 +0.0 2,404,041 - CCNA_02253 0.87 +0.6 2,404,079 + CCNA_02253 0.89 -1.3 2,404,079 + CCNA_02253 0.89 -0.4 2,404,097 - -0.5 2,404,173 + +0.5 2,404,182 + +1.7 2,404,187 - +0.1 2,404,197 + +1.6 2,404,243 + +1.2 2,404,255 - -2.2 2,404,270 + +0.7 2,404,317 - -0.2 2,404,322 + +0.5 2,404,322 + +0.5 2,404,343 + CCNA_03965 0.23 +2.6 2,404,343 + CCNA_03965 0.23 +0.6 2,404,518 - +1.6 2,404,518 - +2.0 2,404,518 - +1.8 2,404,590 - +1.6 2,404,629 + -1.0 2,404,658 - CCNA_02254 0.12 +0.4 2,404,659 - CCNA_02254 0.12 -0.3 2,404,700 - CCNA_02254 0.16 +1.2 2,404,736 - CCNA_02254 0.19 +0.7 2,404,737 - CCNA_02254 0.19 +1.8 2,404,749 - CCNA_02254 0.20 +0.5 2,404,749 - CCNA_02254 0.20 -0.1 2,404,815 - CCNA_02254 0.26 +1.3 2,404,896 - +0.0 2,405,096 - CCNA_02254 0.50 -0.4 2,405,154 - CCNA_02254 0.55 +0.0 2,405,159 - +1.6 2,405,225 + CCNA_02254 0.61 -1.5 2,405,263 - CCNA_02254 0.64 +1.8 2,405,282 + CCNA_02254 0.66 -1.0 2,405,378 + CCNA_02254 0.74 +0.6 2,405,386 - CCNA_02254 0.75 +0.2 2,405,397 + CCNA_02254 0.76 -1.7
Or see this region's nucleotide sequence