Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00554

Experiment: PYE with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00552 and CCNA_00553 overlap by 4 nucleotidesCCNA_00553 and CCNA_00554 are separated by 65 nucleotidesCCNA_00554 and CCNA_00555 are separated by 72 nucleotidesCCNA_00555 and CCNA_00556 are separated by 84 nucleotides CCNA_00552: CCNA_00552 - cupin superfamily protein, at 568,956 to 569,426 _00552 CCNA_00553: CCNA_00553 - hydroxyacylglutathione hydrolase, at 569,423 to 570,172 _00553 CCNA_00554: CCNA_00554 - methyltransferase, at 570,238 to 571,044 _00554 CCNA_00555: CCNA_00555 - nitrogen regulatory protein P-II, at 571,117 to 571,461 _00555 CCNA_00556: CCNA_00556 - phospholipase D, at 571,546 to 573,063 _00556 Position (kb) 570 571 572Strain fitness (log2 ratio) -2 -1 0 1 2 3at 569.248 kb on + strand, within CCNA_00552at 569.248 kb on + strand, within CCNA_00552at 569.256 kb on - strand, within CCNA_00552at 569.279 kb on - strand, within CCNA_00552at 569.306 kb on + strand, within CCNA_00552at 569.306 kb on + strand, within CCNA_00552at 569.313 kb on + strand, within CCNA_00552at 569.329 kb on - strand, within CCNA_00552at 569.329 kb on - strand, within CCNA_00552at 569.330 kb on - strand, within CCNA_00552at 569.351 kb on + strand, within CCNA_00552at 569.396 kb on + strandat 569.402 kb on + strandat 569.404 kb on - strandat 569.410 kb on - strandat 569.436 kb on - strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.619 kb on - strand, within CCNA_00553at 569.655 kb on + strand, within CCNA_00553at 569.663 kb on - strand, within CCNA_00553at 569.663 kb on - strand, within CCNA_00553at 569.747 kb on - strand, within CCNA_00553at 569.767 kb on - strand, within CCNA_00553at 569.767 kb on - strand, within CCNA_00553at 569.824 kb on + strand, within CCNA_00553at 569.832 kb on - strand, within CCNA_00553at 569.832 kb on - strand, within CCNA_00553at 569.854 kb on - strand, within CCNA_00553at 569.874 kb on + strand, within CCNA_00553at 569.890 kb on - strand, within CCNA_00553at 569.904 kb on - strand, within CCNA_00553at 569.906 kb on + strand, within CCNA_00553at 569.945 kb on - strand, within CCNA_00553at 569.947 kb on - strand, within CCNA_00553at 570.001 kb on + strand, within CCNA_00553at 570.083 kb on - strand, within CCNA_00553at 570.134 kb on + strandat 570.136 kb on + strandat 570.157 kb on - strandat 570.175 kb on - strandat 570.198 kb on + strandat 570.203 kb on + strandat 570.203 kb on + strandat 570.203 kb on + strandat 570.222 kb on + strandat 570.257 kb on + strandat 570.276 kb on - strandat 570.285 kb on + strandat 570.285 kb on + strandat 570.295 kb on + strandat 570.300 kb on + strandat 570.318 kb on + strandat 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.361 kb on + strand, within CCNA_00554at 570.369 kb on - strand, within CCNA_00554at 570.369 kb on - strand, within CCNA_00554at 570.441 kb on - strand, within CCNA_00554at 570.493 kb on + strand, within CCNA_00554at 570.560 kb on - strand, within CCNA_00554at 570.582 kb on + strand, within CCNA_00554at 570.605 kb on - strand, within CCNA_00554at 570.639 kb on - strand, within CCNA_00554at 570.648 kb on + strand, within CCNA_00554at 570.649 kb on - strand, within CCNA_00554at 570.665 kb on + strand, within CCNA_00554at 570.752 kb on + strand, within CCNA_00554at 570.752 kb on + strand, within CCNA_00554at 570.752 kb on + strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.770 kb on - strand, within CCNA_00554at 570.787 kb on + strand, within CCNA_00554at 570.805 kb on - strand, within CCNA_00554at 570.816 kb on + strand, within CCNA_00554at 570.821 kb on + strand, within CCNA_00554at 570.824 kb on - strand, within CCNA_00554at 570.829 kb on - strand, within CCNA_00554at 570.829 kb on - strand, within CCNA_00554at 570.829 kb on - strand, within CCNA_00554at 570.829 kb on - strand, within CCNA_00554at 570.848 kb on + strand, within CCNA_00554at 570.850 kb on - strand, within CCNA_00554at 570.853 kb on + strand, within CCNA_00554at 570.861 kb on - strand, within CCNA_00554at 570.861 kb on - strand, within CCNA_00554at 570.871 kb on + strand, within CCNA_00554at 570.871 kb on + strand, within CCNA_00554at 570.899 kb on - strand, within CCNA_00554at 570.899 kb on - strand, within CCNA_00554at 570.899 kb on - strand, within CCNA_00554at 570.950 kb on - strand, within CCNA_00554at 570.996 kb on + strandat 570.996 kb on + strandat 570.999 kb on - strandat 570.999 kb on - strandat 571.004 kb on - strandat 571.031 kb on + strandat 571.031 kb on + strandat 571.039 kb on - strandat 571.056 kb on - strandat 571.076 kb on + strandat 571.085 kb on + strandat 571.110 kb on - strandat 571.117 kb on + strandat 571.145 kb on - strandat 571.159 kb on - strand, within CCNA_00555at 571.190 kb on + strand, within CCNA_00555at 571.190 kb on + strand, within CCNA_00555at 571.195 kb on + strand, within CCNA_00555at 571.195 kb on + strand, within CCNA_00555at 571.210 kb on - strand, within CCNA_00555at 571.213 kb on - strand, within CCNA_00555at 571.226 kb on + strand, within CCNA_00555at 571.228 kb on - strand, within CCNA_00555at 571.251 kb on + strand, within CCNA_00555at 571.272 kb on + strand, within CCNA_00555at 571.284 kb on + strand, within CCNA_00555at 571.292 kb on - strand, within CCNA_00555at 571.297 kb on - strand, within CCNA_00555at 571.340 kb on + strand, within CCNA_00555at 571.342 kb on + strand, within CCNA_00555at 571.387 kb on + strand, within CCNA_00555at 571.400 kb on + strand, within CCNA_00555at 571.424 kb on + strand, within CCNA_00555at 571.473 kb on + strandat 571.509 kb on - strandat 571.538 kb on + strandat 571.546 kb on - strandat 571.548 kb on + strandat 571.548 kb on + strandat 571.552 kb on - strandat 571.626 kb on + strandat 571.635 kb on - strandat 571.647 kb on - strandat 571.668 kb on + strandat 571.722 kb on + strand, within CCNA_00556at 571.728 kb on + strand, within CCNA_00556at 571.736 kb on - strand, within CCNA_00556at 571.741 kb on - strand, within CCNA_00556at 571.746 kb on - strand, within CCNA_00556at 571.760 kb on - strand, within CCNA_00556at 571.870 kb on + strand, within CCNA_00556at 571.878 kb on + strand, within CCNA_00556at 571.878 kb on + strand, within CCNA_00556at 571.895 kb on - strand, within CCNA_00556at 571.945 kb on + strand, within CCNA_00556at 571.974 kb on - strand, within CCNA_00556at 572.004 kb on + strand, within CCNA_00556at 572.004 kb on + strand, within CCNA_00556at 572.036 kb on + strand, within CCNA_00556

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol%
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569,248 + CCNA_00552 0.62 +1.0
569,248 + CCNA_00552 0.62 +1.0
569,256 - CCNA_00552 0.64 +0.2
569,279 - CCNA_00552 0.69 +0.6
569,306 + CCNA_00552 0.74 +0.8
569,306 + CCNA_00552 0.74 -1.9
569,313 + CCNA_00552 0.76 +1.0
569,329 - CCNA_00552 0.79 +1.5
569,329 - CCNA_00552 0.79 -0.3
569,330 - CCNA_00552 0.79 +1.0
569,351 + CCNA_00552 0.84 -0.8
569,396 + -1.2
569,402 + +1.4
569,404 - -1.0
569,410 - -0.2
569,436 - -1.1
569,438 + -0.2
569,438 + -1.7
569,438 + -1.4
569,438 + -0.1
569,438 + -1.0
569,446 - +1.0
569,446 - +0.4
569,446 - -1.3
569,589 + CCNA_00553 0.22 +1.1
569,589 + CCNA_00553 0.22 -0.0
569,589 + CCNA_00553 0.22 -1.3
569,589 + CCNA_00553 0.22 -0.6
569,597 - CCNA_00553 0.23 +0.0
569,597 - CCNA_00553 0.23 -0.1
569,619 - CCNA_00553 0.26 +2.0
569,655 + CCNA_00553 0.31 -0.2
569,663 - CCNA_00553 0.32 +0.7
569,663 - CCNA_00553 0.32 -0.4
569,747 - CCNA_00553 0.43 -1.2
569,767 - CCNA_00553 0.46 +0.4
569,767 - CCNA_00553 0.46 -0.9
569,824 + CCNA_00553 0.53 +0.2
569,832 - CCNA_00553 0.55 -0.0
569,832 - CCNA_00553 0.55 +1.0
569,854 - CCNA_00553 0.57 +0.2
569,874 + CCNA_00553 0.60 +0.9
569,890 - CCNA_00553 0.62 +1.7
569,904 - CCNA_00553 0.64 +2.5
569,906 + CCNA_00553 0.64 -1.5
569,945 - CCNA_00553 0.70 -0.6
569,947 - CCNA_00553 0.70 +1.0
570,001 + CCNA_00553 0.77 +0.7
570,083 - CCNA_00553 0.88 -0.5
570,134 + -1.0
570,136 + +1.5
570,157 - -1.0
570,175 - +0.5
570,198 + -1.9
570,203 + -0.2
570,203 + -0.5
570,203 + +1.6
570,222 + +0.8
570,257 + +1.7
570,276 - +1.0
570,285 + +0.4
570,285 + +2.4
570,295 + +0.9
570,300 + +0.8
570,318 + +0.4
570,327 + CCNA_00554 0.11 +1.5
570,327 + CCNA_00554 0.11 +2.6
570,327 + CCNA_00554 0.11 +1.6
570,327 + CCNA_00554 0.11 +1.4
570,335 - CCNA_00554 0.12 -0.1
570,335 - CCNA_00554 0.12 -1.0
570,335 - CCNA_00554 0.12 +2.4
570,335 - CCNA_00554 0.12 +1.0
570,361 + CCNA_00554 0.15 +1.0
570,369 - CCNA_00554 0.16 -0.1
570,369 - CCNA_00554 0.16 +0.7
570,441 - CCNA_00554 0.25 +0.8
570,493 + CCNA_00554 0.32 +1.2
570,560 - CCNA_00554 0.40 +1.0
570,582 + CCNA_00554 0.43 +3.3
570,605 - CCNA_00554 0.45 +1.2
570,639 - CCNA_00554 0.50 +0.3
570,648 + CCNA_00554 0.51 +0.8
570,649 - CCNA_00554 0.51 -1.7
570,665 + CCNA_00554 0.53 +1.0
570,752 + CCNA_00554 0.64 +1.8
570,752 + CCNA_00554 0.64 +1.2
570,752 + CCNA_00554 0.64 +0.9
570,760 - CCNA_00554 0.65 +0.3
570,760 - CCNA_00554 0.65 +0.2
570,760 - CCNA_00554 0.65 -0.5
570,760 - CCNA_00554 0.65 -0.5
570,770 - CCNA_00554 0.66 -0.8
570,787 + CCNA_00554 0.68 +1.5
570,805 - CCNA_00554 0.70 +1.8
570,816 + CCNA_00554 0.72 +0.8
570,821 + CCNA_00554 0.72 +2.4
570,824 - CCNA_00554 0.73 -0.2
570,829 - CCNA_00554 0.73 +1.0
570,829 - CCNA_00554 0.73 +0.1
570,829 - CCNA_00554 0.73 +0.6
570,829 - CCNA_00554 0.73 -0.2
570,848 + CCNA_00554 0.76 +0.7
570,850 - CCNA_00554 0.76 -1.5
570,853 + CCNA_00554 0.76 +1.5
570,861 - CCNA_00554 0.77 -0.0
570,861 - CCNA_00554 0.77 +0.2
570,871 + CCNA_00554 0.78 +2.1
570,871 + CCNA_00554 0.78 -0.3
570,899 - CCNA_00554 0.82 -0.9
570,899 - CCNA_00554 0.82 +0.4
570,899 - CCNA_00554 0.82 -0.3
570,950 - CCNA_00554 0.88 -0.7
570,996 + +1.0
570,996 + -1.6
570,999 - -1.1
570,999 - +0.7
571,004 - -1.2
571,031 + -1.0
571,031 + +2.0
571,039 - -0.2
571,056 - -0.0
571,076 + +1.3
571,085 + +0.3
571,110 - -1.0
571,117 + +0.4
571,145 - +0.7
571,159 - CCNA_00555 0.12 +1.1
571,190 + CCNA_00555 0.21 +1.3
571,190 + CCNA_00555 0.21 +0.7
571,195 + CCNA_00555 0.23 +1.2
571,195 + CCNA_00555 0.23 +0.9
571,210 - CCNA_00555 0.27 -0.8
571,213 - CCNA_00555 0.28 -0.2
571,226 + CCNA_00555 0.32 +1.0
571,228 - CCNA_00555 0.32 -0.0
571,251 + CCNA_00555 0.39 -0.3
571,272 + CCNA_00555 0.45 +1.1
571,284 + CCNA_00555 0.48 +1.0
571,292 - CCNA_00555 0.51 -1.2
571,297 - CCNA_00555 0.52 +3.0
571,340 + CCNA_00555 0.65 +0.5
571,342 + CCNA_00555 0.65 +2.0
571,387 + CCNA_00555 0.78 +2.6
571,400 + CCNA_00555 0.82 +2.7
571,424 + CCNA_00555 0.89 +0.9
571,473 + +0.0
571,509 - -1.5
571,538 + +1.8
571,546 - +0.2
571,548 + +1.7
571,548 + +0.6
571,552 - -1.0
571,626 + +0.4
571,635 - +1.0
571,647 - -0.6
571,668 + +0.9
571,722 + CCNA_00556 0.12 -0.3
571,728 + CCNA_00556 0.12 +0.5
571,736 - CCNA_00556 0.13 +1.1
571,741 - CCNA_00556 0.13 +0.4
571,746 - CCNA_00556 0.13 +1.9
571,760 - CCNA_00556 0.14 -0.6
571,870 + CCNA_00556 0.21 -0.6
571,878 + CCNA_00556 0.22 +0.7
571,878 + CCNA_00556 0.22 -0.1
571,895 - CCNA_00556 0.23 +1.2
571,945 + CCNA_00556 0.26 -0.1
571,974 - CCNA_00556 0.28 +0.6
572,004 + CCNA_00556 0.30 +0.2
572,004 + CCNA_00556 0.30 +1.2
572,036 + CCNA_00556 0.32 +0.4

Or see this region's nucleotide sequence