Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00551

Experiment: PYE with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00550 and CCNA_00551 are separated by 207 nucleotidesCCNA_00551 and CCNA_00552 are separated by 255 nucleotidesCCNA_00552 and CCNA_00553 overlap by 4 nucleotides CCNA_00550: CCNA_00550 - LacI-family transcriptional regulator, at 567,006 to 568,052 _00550 CCNA_00551: CCNA_00551 - hypothetical protein, at 568,260 to 568,700 _00551 CCNA_00552: CCNA_00552 - cupin superfamily protein, at 568,956 to 569,426 _00552 CCNA_00553: CCNA_00553 - hydroxyacylglutathione hydrolase, at 569,423 to 570,172 _00553 Position (kb) 568 569Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 567.260 kb on - strand, within CCNA_00550at 567.278 kb on - strand, within CCNA_00550at 567.364 kb on - strand, within CCNA_00550at 567.373 kb on - strand, within CCNA_00550at 567.385 kb on + strand, within CCNA_00550at 567.385 kb on + strand, within CCNA_00550at 567.398 kb on + strand, within CCNA_00550at 567.407 kb on - strand, within CCNA_00550at 567.407 kb on - strand, within CCNA_00550at 567.425 kb on + strand, within CCNA_00550at 567.435 kb on + strand, within CCNA_00550at 567.448 kb on + strand, within CCNA_00550at 567.466 kb on - strand, within CCNA_00550at 567.466 kb on - strand, within CCNA_00550at 567.471 kb on + strand, within CCNA_00550at 567.471 kb on + strand, within CCNA_00550at 567.478 kb on + strand, within CCNA_00550at 567.479 kb on - strand, within CCNA_00550at 567.486 kb on - strand, within CCNA_00550at 567.486 kb on - strand, within CCNA_00550at 567.521 kb on + strand, within CCNA_00550at 567.524 kb on - strand, within CCNA_00550at 567.524 kb on - strand, within CCNA_00550at 567.529 kb on - strand, within CCNA_00550at 567.541 kb on + strand, within CCNA_00550at 567.595 kb on - strand, within CCNA_00550at 567.596 kb on + strand, within CCNA_00550at 567.647 kb on + strand, within CCNA_00550at 567.655 kb on - strand, within CCNA_00550at 567.660 kb on + strand, within CCNA_00550at 567.660 kb on + strand, within CCNA_00550at 567.660 kb on + strand, within CCNA_00550at 567.667 kb on + strand, within CCNA_00550at 567.668 kb on - strand, within CCNA_00550at 567.675 kb on - strand, within CCNA_00550at 567.675 kb on - strand, within CCNA_00550at 567.716 kb on + strand, within CCNA_00550at 567.786 kb on + strand, within CCNA_00550at 567.786 kb on + strand, within CCNA_00550at 567.794 kb on - strand, within CCNA_00550at 567.804 kb on + strand, within CCNA_00550at 567.828 kb on + strandat 567.841 kb on - strand, within CCNA_00550at 567.842 kb on + strand, within CCNA_00550at 567.862 kb on + strand, within CCNA_00550at 567.870 kb on - strand, within CCNA_00550at 567.886 kb on + strand, within CCNA_00550at 567.894 kb on - strand, within CCNA_00550at 567.905 kb on - strand, within CCNA_00550at 567.925 kb on - strand, within CCNA_00550at 567.936 kb on + strand, within CCNA_00550at 567.944 kb on - strand, within CCNA_00550at 567.991 kb on - strandat 568.008 kb on + strandat 568.122 kb on + strandat 568.186 kb on + strandat 568.194 kb on - strandat 568.221 kb on - strandat 568.233 kb on + strandat 568.241 kb on + strandat 568.257 kb on + strandat 568.265 kb on - strandat 568.265 kb on - strandat 568.266 kb on - strandat 568.290 kb on - strandat 568.292 kb on - strandat 568.292 kb on - strandat 568.299 kb on - strandat 568.305 kb on + strand, within CCNA_00551at 568.313 kb on - strand, within CCNA_00551at 568.313 kb on - strand, within CCNA_00551at 568.326 kb on + strand, within CCNA_00551at 568.326 kb on + strand, within CCNA_00551at 568.334 kb on - strand, within CCNA_00551at 568.342 kb on + strand, within CCNA_00551at 568.351 kb on - strand, within CCNA_00551at 568.353 kb on + strand, within CCNA_00551at 568.510 kb on + strand, within CCNA_00551at 568.518 kb on - strand, within CCNA_00551at 568.567 kb on + strand, within CCNA_00551at 568.576 kb on + strand, within CCNA_00551at 568.583 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.616 kb on - strand, within CCNA_00551at 568.636 kb on - strand, within CCNA_00551at 568.636 kb on - strand, within CCNA_00551at 568.641 kb on - strand, within CCNA_00551at 568.651 kb on - strand, within CCNA_00551at 568.651 kb on - strand, within CCNA_00551at 568.691 kb on + strandat 568.691 kb on + strandat 568.691 kb on - strandat 568.699 kb on - strandat 568.758 kb on - strandat 568.785 kb on + strandat 568.803 kb on - strandat 568.826 kb on + strandat 568.834 kb on - strandat 568.849 kb on + strandat 568.849 kb on - strandat 568.869 kb on - strandat 568.872 kb on + strandat 568.880 kb on - strandat 568.882 kb on - strandat 568.884 kb on + strandat 568.888 kb on + strandat 568.888 kb on + strandat 568.888 kb on + strandat 568.888 kb on + strandat 568.908 kb on + strandat 568.921 kb on - strandat 569.005 kb on + strand, within CCNA_00552at 569.008 kb on - strand, within CCNA_00552at 569.039 kb on - strand, within CCNA_00552at 569.050 kb on + strand, within CCNA_00552at 569.063 kb on - strand, within CCNA_00552at 569.073 kb on + strand, within CCNA_00552at 569.096 kb on - strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.125 kb on - strand, within CCNA_00552at 569.132 kb on - strand, within CCNA_00552at 569.140 kb on - strand, within CCNA_00552at 569.154 kb on - strand, within CCNA_00552at 569.191 kb on + strand, within CCNA_00552at 569.191 kb on + strand, within CCNA_00552at 569.213 kb on - strand, within CCNA_00552at 569.213 kb on - strand, within CCNA_00552at 569.223 kb on - strand, within CCNA_00552at 569.226 kb on + strand, within CCNA_00552at 569.234 kb on - strand, within CCNA_00552at 569.248 kb on + strand, within CCNA_00552at 569.248 kb on + strand, within CCNA_00552at 569.256 kb on - strand, within CCNA_00552at 569.279 kb on - strand, within CCNA_00552at 569.306 kb on + strand, within CCNA_00552at 569.306 kb on + strand, within CCNA_00552at 569.313 kb on + strand, within CCNA_00552at 569.329 kb on - strand, within CCNA_00552at 569.329 kb on - strand, within CCNA_00552at 569.330 kb on - strand, within CCNA_00552at 569.351 kb on + strand, within CCNA_00552at 569.396 kb on + strandat 569.402 kb on + strandat 569.404 kb on - strandat 569.410 kb on - strandat 569.436 kb on - strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.619 kb on - strand, within CCNA_00553at 569.655 kb on + strand, within CCNA_00553at 569.663 kb on - strand, within CCNA_00553at 569.663 kb on - strand, within CCNA_00553

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol%
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567,260 - CCNA_00550 0.24 +0.4
567,278 - CCNA_00550 0.26 -0.8
567,364 - CCNA_00550 0.34 -1.5
567,373 - CCNA_00550 0.35 +3.0
567,385 + CCNA_00550 0.36 +0.5
567,385 + CCNA_00550 0.36 -1.4
567,398 + CCNA_00550 0.37 +0.7
567,407 - CCNA_00550 0.38 -0.1
567,407 - CCNA_00550 0.38 -0.7
567,425 + CCNA_00550 0.40 -0.4
567,435 + CCNA_00550 0.41 +0.4
567,448 + CCNA_00550 0.42 +1.5
567,466 - CCNA_00550 0.44 +1.0
567,466 - CCNA_00550 0.44 -0.0
567,471 + CCNA_00550 0.44 -1.0
567,471 + CCNA_00550 0.44 -0.8
567,478 + CCNA_00550 0.45 +1.0
567,479 - CCNA_00550 0.45 -1.2
567,486 - CCNA_00550 0.46 -1.4
567,486 - CCNA_00550 0.46 -0.6
567,521 + CCNA_00550 0.49 -0.1
567,524 - CCNA_00550 0.49 -1.9
567,524 - CCNA_00550 0.49 -1.7
567,529 - CCNA_00550 0.50 -0.0
567,541 + CCNA_00550 0.51 -0.1
567,595 - CCNA_00550 0.56 +2.0
567,596 + CCNA_00550 0.56 +1.4
567,647 + CCNA_00550 0.61 -0.0
567,655 - CCNA_00550 0.62 +1.0
567,660 + CCNA_00550 0.62 +0.6
567,660 + CCNA_00550 0.62 -0.4
567,660 + CCNA_00550 0.62 +1.0
567,667 + CCNA_00550 0.63 -0.1
567,668 - CCNA_00550 0.63 -1.7
567,675 - CCNA_00550 0.64 -0.8
567,675 - CCNA_00550 0.64 +1.0
567,716 + CCNA_00550 0.68 -0.2
567,786 + CCNA_00550 0.74 +0.1
567,786 + CCNA_00550 0.74 +1.0
567,794 - CCNA_00550 0.75 -2.4
567,804 + CCNA_00550 0.76 +1.2
567,828 + +2.0
567,841 - CCNA_00550 0.80 -1.7
567,842 + CCNA_00550 0.80 -0.5
567,862 + CCNA_00550 0.82 +0.5
567,870 - CCNA_00550 0.83 -0.6
567,886 + CCNA_00550 0.84 -0.1
567,894 - CCNA_00550 0.85 +1.0
567,905 - CCNA_00550 0.86 -0.4
567,925 - CCNA_00550 0.88 -0.5
567,936 + CCNA_00550 0.89 -1.6
567,944 - CCNA_00550 0.90 -0.3
567,991 - -0.8
568,008 + +0.6
568,122 + +0.7
568,186 + -1.9
568,194 - -0.4
568,221 - -3.5
568,233 + -0.4
568,241 + -2.0
568,257 + -1.4
568,265 - -0.1
568,265 - +1.4
568,266 - +2.0
568,290 - +0.5
568,292 - -0.8
568,292 - -0.3
568,299 - -1.4
568,305 + CCNA_00551 0.10 +0.6
568,313 - CCNA_00551 0.12 +0.4
568,313 - CCNA_00551 0.12 +0.2
568,326 + CCNA_00551 0.15 -0.6
568,326 + CCNA_00551 0.15 +1.0
568,334 - CCNA_00551 0.17 -1.6
568,342 + CCNA_00551 0.19 -1.6
568,351 - CCNA_00551 0.21 -0.2
568,353 + CCNA_00551 0.21 +1.0
568,510 + CCNA_00551 0.57 -0.8
568,518 - CCNA_00551 0.59 +1.7
568,567 + CCNA_00551 0.70 +0.1
568,576 + CCNA_00551 0.72 +1.6
568,583 + CCNA_00551 0.73 -1.7
568,601 + CCNA_00551 0.77 -0.4
568,601 + CCNA_00551 0.77 -1.2
568,601 + CCNA_00551 0.77 +1.0
568,601 + CCNA_00551 0.77 -0.6
568,609 - CCNA_00551 0.79 -2.6
568,609 - CCNA_00551 0.79 +0.8
568,609 - CCNA_00551 0.79 +0.9
568,609 - CCNA_00551 0.79 +0.6
568,616 - CCNA_00551 0.81 -1.2
568,636 - CCNA_00551 0.85 +0.6
568,636 - CCNA_00551 0.85 -0.4
568,641 - CCNA_00551 0.86 -0.1
568,651 - CCNA_00551 0.89 +0.6
568,651 - CCNA_00551 0.89 -0.4
568,691 + +0.1
568,691 + +2.7
568,691 - -0.4
568,699 - -0.0
568,758 - -0.4
568,785 + -1.9
568,803 - -0.6
568,826 + +0.2
568,834 - +0.4
568,849 + +1.8
568,849 - -0.6
568,869 - -0.6
568,872 + -0.4
568,880 - +1.0
568,882 - -1.7
568,884 + -0.0
568,888 + +1.3
568,888 + -0.2
568,888 + -1.1
568,888 + -0.7
568,908 + -1.8
568,921 - -1.3
569,005 + CCNA_00552 0.10 +1.0
569,008 - CCNA_00552 0.11 -3.1
569,039 - CCNA_00552 0.18 +1.6
569,050 + CCNA_00552 0.20 +0.7
569,063 - CCNA_00552 0.23 +2.2
569,073 + CCNA_00552 0.25 -1.0
569,096 - CCNA_00552 0.30 +0.7
569,117 + CCNA_00552 0.34 +1.4
569,117 + CCNA_00552 0.34 -1.5
569,117 + CCNA_00552 0.34 -0.3
569,125 - CCNA_00552 0.36 -0.1
569,132 - CCNA_00552 0.37 -0.0
569,140 - CCNA_00552 0.39 -0.7
569,154 - CCNA_00552 0.42 +0.9
569,191 + CCNA_00552 0.50 -0.6
569,191 + CCNA_00552 0.50 -1.0
569,213 - CCNA_00552 0.55 +1.0
569,213 - CCNA_00552 0.55 +0.8
569,223 - CCNA_00552 0.57 +0.8
569,226 + CCNA_00552 0.57 -1.3
569,234 - CCNA_00552 0.59 +0.7
569,248 + CCNA_00552 0.62 +1.0
569,248 + CCNA_00552 0.62 +1.0
569,256 - CCNA_00552 0.64 +0.2
569,279 - CCNA_00552 0.69 +0.6
569,306 + CCNA_00552 0.74 +0.8
569,306 + CCNA_00552 0.74 -1.9
569,313 + CCNA_00552 0.76 +1.0
569,329 - CCNA_00552 0.79 +1.5
569,329 - CCNA_00552 0.79 -0.3
569,330 - CCNA_00552 0.79 +1.0
569,351 + CCNA_00552 0.84 -0.8
569,396 + -1.2
569,402 + +1.4
569,404 - -1.0
569,410 - -0.2
569,436 - -1.1
569,438 + -0.2
569,438 + -1.7
569,438 + -1.4
569,438 + -0.1
569,438 + -1.0
569,446 - +1.0
569,446 - +0.4
569,446 - -1.3
569,589 + CCNA_00553 0.22 +1.1
569,589 + CCNA_00553 0.22 -0.0
569,589 + CCNA_00553 0.22 -1.3
569,589 + CCNA_00553 0.22 -0.6
569,597 - CCNA_00553 0.23 +0.0
569,597 - CCNA_00553 0.23 -0.1
569,619 - CCNA_00553 0.26 +2.0
569,655 + CCNA_00553 0.31 -0.2
569,663 - CCNA_00553 0.32 +0.7
569,663 - CCNA_00553 0.32 -0.4

Or see this region's nucleotide sequence