Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00549

Experiment: PYE with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00546 and CCNA_00547 are separated by 294 nucleotidesCCNA_00547 and CCNA_00548 are separated by 24 nucleotidesCCNA_00548 and CCNA_00549 overlap by 7 nucleotidesCCNA_00549 and CCNA_00550 overlap by 85 nucleotides CCNA_00546: CCNA_00546 - hypothetical protein, at 564,671 to 565,453 _00546 CCNA_00547: CCNA_00547 - PurR-family transcriptional regulator, at 565,748 to 565,879 _00547 CCNA_00548: CCNA_00548 - transposase, HTH-Tnp1 superfamily, at 565,904 to 566,170 _00548 CCNA_00549: CCNA_00549 - transposase, IS2 family, at 566,164 to 567,090 _00549 CCNA_00550: CCNA_00550 - LacI-family transcriptional regulator, at 567,006 to 568,052 _00550 Position (kb) 566 567 568Strain fitness (log2 ratio) -2 -1 0 1 2 3at 565.602 kb on + strandat 565.620 kb on - strandat 565.662 kb on - strandat 565.663 kb on + strandat 565.671 kb on - strandat 565.753 kb on + strandat 565.753 kb on + strandat 565.753 kb on + strandat 565.753 kb on + strandat 565.753 kb on + strandat 565.761 kb on - strandat 565.782 kb on - strand, within CCNA_00547at 565.810 kb on + strand, within CCNA_00547at 565.810 kb on + strand, within CCNA_00547at 565.810 kb on + strand, within CCNA_00547at 565.810 kb on + strand, within CCNA_00547at 565.818 kb on - strand, within CCNA_00547at 565.847 kb on - strand, within CCNA_00547at 565.881 kb on - strandat 565.881 kb on - strandat 565.881 kb on - strandat 565.881 kb on - strandat 567.093 kb on + strandat 567.093 kb on + strandat 567.130 kb on - strand, within CCNA_00550at 567.142 kb on - strand, within CCNA_00550at 567.184 kb on + strand, within CCNA_00550at 567.184 kb on + strand, within CCNA_00550at 567.189 kb on + strandat 567.192 kb on - strand, within CCNA_00550at 567.192 kb on - strand, within CCNA_00550at 567.192 kb on - strand, within CCNA_00550at 567.219 kb on - strand, within CCNA_00550at 567.219 kb on - strand, within CCNA_00550at 567.219 kb on - strand, within CCNA_00550at 567.221 kb on + strand, within CCNA_00550at 567.229 kb on - strand, within CCNA_00550at 567.229 kb on - strand, within CCNA_00550at 567.253 kb on - strand, within CCNA_00550at 567.260 kb on - strand, within CCNA_00550at 567.278 kb on - strand, within CCNA_00550at 567.364 kb on - strand, within CCNA_00550at 567.373 kb on - strand, within CCNA_00550at 567.385 kb on + strand, within CCNA_00550at 567.385 kb on + strand, within CCNA_00550at 567.398 kb on + strand, within CCNA_00550at 567.407 kb on - strand, within CCNA_00550at 567.407 kb on - strand, within CCNA_00550at 567.425 kb on + strand, within CCNA_00550at 567.435 kb on + strand, within CCNA_00550at 567.448 kb on + strand, within CCNA_00550at 567.466 kb on - strand, within CCNA_00550at 567.466 kb on - strand, within CCNA_00550at 567.471 kb on + strand, within CCNA_00550at 567.471 kb on + strand, within CCNA_00550at 567.478 kb on + strand, within CCNA_00550at 567.479 kb on - strand, within CCNA_00550at 567.486 kb on - strand, within CCNA_00550at 567.486 kb on - strand, within CCNA_00550at 567.521 kb on + strand, within CCNA_00550at 567.524 kb on - strand, within CCNA_00550at 567.524 kb on - strand, within CCNA_00550at 567.529 kb on - strand, within CCNA_00550at 567.541 kb on + strand, within CCNA_00550at 567.595 kb on - strand, within CCNA_00550at 567.596 kb on + strand, within CCNA_00550at 567.647 kb on + strand, within CCNA_00550at 567.655 kb on - strand, within CCNA_00550at 567.660 kb on + strand, within CCNA_00550at 567.660 kb on + strand, within CCNA_00550at 567.660 kb on + strand, within CCNA_00550at 567.667 kb on + strand, within CCNA_00550at 567.668 kb on - strand, within CCNA_00550at 567.675 kb on - strand, within CCNA_00550at 567.675 kb on - strand, within CCNA_00550at 567.716 kb on + strand, within CCNA_00550at 567.786 kb on + strand, within CCNA_00550at 567.786 kb on + strand, within CCNA_00550at 567.794 kb on - strand, within CCNA_00550at 567.804 kb on + strand, within CCNA_00550at 567.828 kb on + strandat 567.841 kb on - strand, within CCNA_00550at 567.842 kb on + strand, within CCNA_00550at 567.862 kb on + strand, within CCNA_00550at 567.870 kb on - strand, within CCNA_00550at 567.886 kb on + strand, within CCNA_00550at 567.894 kb on - strand, within CCNA_00550at 567.905 kb on - strand, within CCNA_00550at 567.925 kb on - strand, within CCNA_00550at 567.936 kb on + strand, within CCNA_00550at 567.944 kb on - strand, within CCNA_00550at 567.991 kb on - strandat 568.008 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol%
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565,602 + +1.1
565,620 - +0.2
565,662 - +1.4
565,663 + -0.3
565,671 - -0.7
565,753 + +0.7
565,753 + +0.3
565,753 + +1.1
565,753 + +0.7
565,753 + +0.8
565,761 - -1.2
565,782 - CCNA_00547 0.26 -0.3
565,810 + CCNA_00547 0.47 +1.5
565,810 + CCNA_00547 0.47 +1.5
565,810 + CCNA_00547 0.47 +1.2
565,810 + CCNA_00547 0.47 -0.7
565,818 - CCNA_00547 0.53 +0.2
565,847 - CCNA_00547 0.75 +0.6
565,881 - +1.8
565,881 - +1.6
565,881 - +1.7
565,881 - +1.5
567,093 + +0.6
567,093 + +0.7
567,130 - CCNA_00550 0.12 -0.4
567,142 - CCNA_00550 0.13 -0.0
567,184 + CCNA_00550 0.17 -2.4
567,184 + CCNA_00550 0.17 -0.4
567,189 + +2.0
567,192 - CCNA_00550 0.18 +1.7
567,192 - CCNA_00550 0.18 +2.5
567,192 - CCNA_00550 0.18 +2.6
567,219 - CCNA_00550 0.20 +1.7
567,219 - CCNA_00550 0.20 +1.4
567,219 - CCNA_00550 0.20 +0.9
567,221 + CCNA_00550 0.21 +1.0
567,229 - CCNA_00550 0.21 -1.2
567,229 - CCNA_00550 0.21 -1.0
567,253 - CCNA_00550 0.24 -1.0
567,260 - CCNA_00550 0.24 +0.4
567,278 - CCNA_00550 0.26 -0.8
567,364 - CCNA_00550 0.34 -1.5
567,373 - CCNA_00550 0.35 +3.0
567,385 + CCNA_00550 0.36 +0.5
567,385 + CCNA_00550 0.36 -1.4
567,398 + CCNA_00550 0.37 +0.7
567,407 - CCNA_00550 0.38 -0.1
567,407 - CCNA_00550 0.38 -0.7
567,425 + CCNA_00550 0.40 -0.4
567,435 + CCNA_00550 0.41 +0.4
567,448 + CCNA_00550 0.42 +1.5
567,466 - CCNA_00550 0.44 +1.0
567,466 - CCNA_00550 0.44 -0.0
567,471 + CCNA_00550 0.44 -1.0
567,471 + CCNA_00550 0.44 -0.8
567,478 + CCNA_00550 0.45 +1.0
567,479 - CCNA_00550 0.45 -1.2
567,486 - CCNA_00550 0.46 -1.4
567,486 - CCNA_00550 0.46 -0.6
567,521 + CCNA_00550 0.49 -0.1
567,524 - CCNA_00550 0.49 -1.9
567,524 - CCNA_00550 0.49 -1.7
567,529 - CCNA_00550 0.50 -0.0
567,541 + CCNA_00550 0.51 -0.1
567,595 - CCNA_00550 0.56 +2.0
567,596 + CCNA_00550 0.56 +1.4
567,647 + CCNA_00550 0.61 -0.0
567,655 - CCNA_00550 0.62 +1.0
567,660 + CCNA_00550 0.62 +0.6
567,660 + CCNA_00550 0.62 -0.4
567,660 + CCNA_00550 0.62 +1.0
567,667 + CCNA_00550 0.63 -0.1
567,668 - CCNA_00550 0.63 -1.7
567,675 - CCNA_00550 0.64 -0.8
567,675 - CCNA_00550 0.64 +1.0
567,716 + CCNA_00550 0.68 -0.2
567,786 + CCNA_00550 0.74 +0.1
567,786 + CCNA_00550 0.74 +1.0
567,794 - CCNA_00550 0.75 -2.4
567,804 + CCNA_00550 0.76 +1.2
567,828 + +2.0
567,841 - CCNA_00550 0.80 -1.7
567,842 + CCNA_00550 0.80 -0.5
567,862 + CCNA_00550 0.82 +0.5
567,870 - CCNA_00550 0.83 -0.6
567,886 + CCNA_00550 0.84 -0.1
567,894 - CCNA_00550 0.85 +1.0
567,905 - CCNA_00550 0.86 -0.4
567,925 - CCNA_00550 0.88 -0.5
567,936 + CCNA_00550 0.89 -1.6
567,944 - CCNA_00550 0.90 -0.3
567,991 - -0.8
568,008 + +0.6

Or see this region's nucleotide sequence