Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00409

Experiment: PYE with Dimethyl Sulfoxide 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00408 and CCNA_00409 are separated by 97 nucleotidesCCNA_00409 and CCNA_00410 are separated by 62 nucleotidesCCNA_00410 and CCNA_00411 are separated by 32 nucleotides CCNA_00408: CCNA_00408 - antiporter protein, at 423,040 to 424,308 _00408 CCNA_00409: CCNA_00409 - hypothetical protein, at 424,406 to 424,450 _00409 CCNA_00410: CCNA_00410 - acetyltransferase, at 424,513 to 425,043 _00410 CCNA_00411: CCNA_00411 - hypothetical protein, at 425,076 to 425,639 _00411 Position (kb) 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 423.435 kb on + strand, within CCNA_00408at 423.458 kb on - strand, within CCNA_00408at 423.473 kb on + strand, within CCNA_00408at 423.478 kb on + strand, within CCNA_00408at 423.481 kb on - strand, within CCNA_00408at 423.483 kb on + strand, within CCNA_00408at 423.483 kb on + strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.505 kb on + strand, within CCNA_00408at 423.505 kb on - strand, within CCNA_00408at 423.513 kb on - strand, within CCNA_00408at 423.513 kb on - strand, within CCNA_00408at 423.558 kb on - strand, within CCNA_00408at 423.558 kb on - strand, within CCNA_00408at 423.570 kb on + strand, within CCNA_00408at 423.578 kb on - strand, within CCNA_00408at 423.591 kb on + strand, within CCNA_00408at 423.596 kb on + strand, within CCNA_00408at 423.626 kb on + strand, within CCNA_00408at 423.626 kb on + strand, within CCNA_00408at 423.626 kb on + strandat 423.626 kb on + strand, within CCNA_00408at 423.626 kb on + strand, within CCNA_00408at 423.634 kb on - strand, within CCNA_00408at 423.634 kb on - strand, within CCNA_00408at 423.634 kb on - strand, within CCNA_00408at 423.673 kb on - strand, within CCNA_00408at 423.680 kb on + strand, within CCNA_00408at 423.699 kb on - strand, within CCNA_00408at 423.707 kb on + strand, within CCNA_00408at 423.711 kb on + strand, within CCNA_00408at 423.711 kb on + strand, within CCNA_00408at 423.711 kb on + strand, within CCNA_00408at 423.719 kb on - strand, within CCNA_00408at 423.719 kb on - strand, within CCNA_00408at 423.719 kb on - strand, within CCNA_00408at 423.719 kb on - strand, within CCNA_00408at 423.736 kb on + strand, within CCNA_00408at 423.738 kb on - strand, within CCNA_00408at 423.772 kb on - strand, within CCNA_00408at 423.800 kb on + strand, within CCNA_00408at 423.800 kb on + strand, within CCNA_00408at 423.808 kb on - strand, within CCNA_00408at 423.822 kb on - strand, within CCNA_00408at 423.856 kb on + strand, within CCNA_00408at 423.912 kb on + strand, within CCNA_00408at 423.951 kb on - strand, within CCNA_00408at 423.958 kb on + strand, within CCNA_00408at 423.966 kb on - strand, within CCNA_00408at 423.973 kb on - strand, within CCNA_00408at 423.975 kb on + strand, within CCNA_00408at 423.975 kb on + strand, within CCNA_00408at 423.996 kb on + strand, within CCNA_00408at 424.002 kb on + strand, within CCNA_00408at 424.054 kb on - strand, within CCNA_00408at 424.059 kb on - strand, within CCNA_00408at 424.064 kb on + strand, within CCNA_00408at 424.076 kb on + strand, within CCNA_00408at 424.092 kb on + strand, within CCNA_00408at 424.159 kb on - strand, within CCNA_00408at 424.159 kb on - strand, within CCNA_00408at 424.159 kb on - strand, within CCNA_00408at 424.168 kb on - strand, within CCNA_00408at 424.199 kb on - strandat 424.205 kb on - strandat 424.205 kb on - strandat 424.205 kb on - strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.217 kb on + strandat 424.222 kb on + strandat 424.225 kb on - strandat 424.225 kb on - strandat 424.225 kb on - strandat 424.225 kb on - strandat 424.230 kb on - strandat 424.230 kb on - strandat 424.264 kb on + strandat 424.342 kb on - strandat 424.346 kb on + strandat 424.363 kb on + strandat 424.365 kb on - strandat 424.368 kb on + strandat 424.369 kb on + strandat 424.369 kb on + strandat 424.369 kb on + strandat 424.369 kb on + strandat 424.369 kb on + strandat 424.369 kb on + strandat 424.371 kb on - strandat 424.377 kb on - strandat 424.377 kb on - strandat 424.377 kb on - strandat 424.404 kb on - strandat 424.445 kb on + strand, within CCNA_00409at 424.452 kb on + strandat 424.465 kb on + strandat 424.473 kb on - strandat 424.473 kb on - strandat 424.481 kb on + strandat 424.489 kb on + strandat 424.530 kb on - strandat 424.728 kb on + strand, within CCNA_00410at 424.795 kb on - strand, within CCNA_00410at 424.999 kb on + strandat 425.010 kb on + strandat 425.024 kb on + strandat 425.032 kb on - strandat 425.066 kb on + strandat 425.073 kb on + strandat 425.081 kb on - strandat 425.088 kb on + strandat 425.088 kb on + strandat 425.088 kb on + strandat 425.088 kb on + strandat 425.088 kb on + strandat 425.088 kb on + strandat 425.090 kb on + strandat 425.090 kb on + strandat 425.090 kb on + strandat 425.090 kb on + strandat 425.096 kb on - strandat 425.096 kb on - strandat 425.100 kb on + strandat 425.100 kb on + strandat 425.100 kb on + strandat 425.103 kb on - strandat 425.110 kb on + strandat 425.120 kb on + strandat 425.140 kb on + strand, within CCNA_00411at 425.165 kb on - strand, within CCNA_00411at 425.221 kb on + strand, within CCNA_00411at 425.248 kb on - strand, within CCNA_00411at 425.299 kb on + strand, within CCNA_00411at 425.299 kb on + strand, within CCNA_00411at 425.307 kb on - strand, within CCNA_00411at 425.314 kb on - strand, within CCNA_00411at 425.335 kb on - strand, within CCNA_00411at 425.354 kb on + strand, within CCNA_00411at 425.362 kb on - strand, within CCNA_00411at 425.362 kb on - strand, within CCNA_00411at 425.362 kb on - strand, within CCNA_00411at 425.367 kb on + strand, within CCNA_00411at 425.377 kb on + strand, within CCNA_00411

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol%
remove
423,435 + CCNA_00408 0.31 +0.6
423,458 - CCNA_00408 0.33 +1.6
423,473 + CCNA_00408 0.34 -1.2
423,478 + CCNA_00408 0.35 -0.4
423,481 - CCNA_00408 0.35 +0.5
423,483 + CCNA_00408 0.35 -1.9
423,483 + CCNA_00408 0.35 -1.7
423,491 - CCNA_00408 0.36 +1.4
423,491 - CCNA_00408 0.36 +0.7
423,491 - CCNA_00408 0.36 -1.0
423,491 - CCNA_00408 0.36 +0.4
423,505 + CCNA_00408 0.37 -1.7
423,505 - CCNA_00408 0.37 -0.1
423,513 - CCNA_00408 0.37 -0.2
423,513 - CCNA_00408 0.37 +0.1
423,558 - CCNA_00408 0.41 +0.5
423,558 - CCNA_00408 0.41 -1.0
423,570 + CCNA_00408 0.42 -0.4
423,578 - CCNA_00408 0.42 +0.1
423,591 + CCNA_00408 0.43 -2.1
423,596 + CCNA_00408 0.44 -0.7
423,626 + CCNA_00408 0.46 -1.4
423,626 + CCNA_00408 0.46 -1.0
423,626 + -0.4
423,626 + CCNA_00408 0.46 +0.0
423,626 + CCNA_00408 0.46 -1.4
423,634 - CCNA_00408 0.47 +0.1
423,634 - CCNA_00408 0.47 -0.8
423,634 - CCNA_00408 0.47 +0.6
423,673 - CCNA_00408 0.50 +0.8
423,680 + CCNA_00408 0.50 -0.5
423,699 - CCNA_00408 0.52 -0.6
423,707 + CCNA_00408 0.53 +0.0
423,711 + CCNA_00408 0.53 +0.9
423,711 + CCNA_00408 0.53 -2.5
423,711 + CCNA_00408 0.53 -0.7
423,719 - CCNA_00408 0.54 +0.0
423,719 - CCNA_00408 0.54 -1.6
423,719 - CCNA_00408 0.54 +0.5
423,719 - CCNA_00408 0.54 +0.1
423,736 + CCNA_00408 0.55 -1.6
423,738 - CCNA_00408 0.55 -1.3
423,772 - CCNA_00408 0.58 -1.7
423,800 + CCNA_00408 0.60 -0.8
423,800 + CCNA_00408 0.60 -1.4
423,808 - CCNA_00408 0.61 +0.0
423,822 - CCNA_00408 0.62 -0.6
423,856 + CCNA_00408 0.64 +2.6
423,912 + CCNA_00408 0.69 +0.0
423,951 - CCNA_00408 0.72 +0.7
423,958 + CCNA_00408 0.72 -1.2
423,966 - CCNA_00408 0.73 -0.7
423,973 - CCNA_00408 0.74 -0.7
423,975 + CCNA_00408 0.74 -1.0
423,975 + CCNA_00408 0.74 -1.6
423,996 + CCNA_00408 0.75 +0.0
424,002 + CCNA_00408 0.76 +0.1
424,054 - CCNA_00408 0.80 -0.6
424,059 - CCNA_00408 0.80 +1.6
424,064 + CCNA_00408 0.81 -0.6
424,076 + CCNA_00408 0.82 +0.0
424,092 + CCNA_00408 0.83 +1.0
424,159 - CCNA_00408 0.88 +0.5
424,159 - CCNA_00408 0.88 -0.3
424,159 - CCNA_00408 0.88 -1.0
424,168 - CCNA_00408 0.89 -1.1
424,199 - +0.9
424,205 - +0.1
424,205 - +0.7
424,205 - -0.6
424,217 + -1.2
424,217 + -1.4
424,217 + -1.1
424,217 + +1.6
424,217 + -0.4
424,217 + +0.0
424,217 + -1.6
424,222 + -2.1
424,225 - -3.4
424,225 - -1.0
424,225 - -0.2
424,225 - -1.5
424,230 - -1.4
424,230 - +0.0
424,264 + +0.9
424,342 - -0.3
424,346 + -1.0
424,363 + +2.1
424,365 - -1.2
424,368 + +1.4
424,369 + +1.8
424,369 + +1.6
424,369 + +1.5
424,369 + +1.7
424,369 + +1.7
424,369 + +1.6
424,371 - -1.9
424,377 - -1.8
424,377 - -0.7
424,377 - +3.2
424,404 - +1.6
424,445 + CCNA_00409 0.87 -2.1
424,452 + +0.9
424,465 + +0.6
424,473 - -2.2
424,473 - -0.9
424,481 + +0.3
424,489 + +0.8
424,530 - -1.4
424,728 + CCNA_00410 0.40 +0.2
424,795 - CCNA_00410 0.53 +0.9
424,999 + +1.4
425,010 + +0.1
425,024 + -1.9
425,032 - -0.4
425,066 + +0.3
425,073 + +0.0
425,081 - -0.7
425,088 + +1.0
425,088 + +1.4
425,088 + +0.4
425,088 + -0.6
425,088 + +0.3
425,088 + +0.9
425,090 + -0.1
425,090 + +0.4
425,090 + -0.8
425,090 + -0.4
425,096 - -0.8
425,096 - +0.6
425,100 + +0.8
425,100 + +0.8
425,100 + +0.8
425,103 - +1.0
425,110 + +1.3
425,120 + +0.6
425,140 + CCNA_00411 0.11 +0.8
425,165 - CCNA_00411 0.16 -1.5
425,221 + CCNA_00411 0.26 -0.4
425,248 - CCNA_00411 0.30 -0.2
425,299 + CCNA_00411 0.40 +0.9
425,299 + CCNA_00411 0.40 +1.6
425,307 - CCNA_00411 0.41 +1.3
425,314 - CCNA_00411 0.42 -1.0
425,335 - CCNA_00411 0.46 -0.4
425,354 + CCNA_00411 0.49 +0.6
425,362 - CCNA_00411 0.51 -0.4
425,362 - CCNA_00411 0.51 -2.1
425,362 - CCNA_00411 0.51 -0.7
425,367 + CCNA_00411 0.52 +0.5
425,377 + CCNA_00411 0.53 +0.4

Or see this region's nucleotide sequence