Strain Fitness in Shewanella loihica PV-4

Strain Fitness in Shewanella loihica PV-4 around Shew_3761

Experiment: 5-Hydroxymethylfurfural 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	5-Hydroxymethylfurfural 10 mM
				remove
4,478,832	-	Shew_3760	0.62	+0.5
4,478,854	+	Shew_3760	0.64	+0.3
4,478,855	+	Shew_3760	0.64	+0.1
4,478,855	+	Shew_3760	0.64	-0.6
4,478,860	-	Shew_3760	0.64	-0.6
4,478,862	-	Shew_3760	0.64	+0.2
4,478,862	-	Shew_3760	0.64	+0.2
4,478,863	-	Shew_3760	0.64	-0.5
4,478,888	+	Shew_3760	0.66	+2.0
4,478,896	+	Shew_3760	0.66	+0.2
4,478,896	+	Shew_3760	0.66	-0.4
4,478,896	+	Shew_3760	0.66	+1.0
4,478,896	+	Shew_3760	0.66	+0.0
4,478,896	+	Shew_3760	0.66	-0.1
4,478,898	+	Shew_3760	0.66	-0.2
4,478,898	+	Shew_3760	0.66	-0.4
4,478,904	-	Shew_3760	0.67	-0.4
4,478,906	-	Shew_3760	0.67	-0.1
4,478,914	-	Shew_3760	0.67	+0.1
4,478,914	-	Shew_3760	0.67	-0.5
4,478,914	-	Shew_3760	0.67	-0.6
4,478,917	-	Shew_3760	0.67	-0.0
4,478,933	+	Shew_3760	0.68	-0.7
4,478,943	+	Shew_3760	0.69	+0.0
4,478,943	+	Shew_3760	0.69	-0.9
4,478,952	-	Shew_3760	0.70	-0.9
4,478,954	+	Shew_3760	0.70	-0.0
4,478,954	+	Shew_3760	0.70	+0.4
4,478,957	-	Shew_3760	0.70	+0.1
4,478,957	+	Shew_3760	0.70	+0.2
4,478,957	-	Shew_3760	0.70	+0.1
4,478,959	+	Shew_3760	0.70	+0.0
4,478,959	+	Shew_3760	0.70	+0.6
4,478,962	-	Shew_3760	0.70	+0.2
4,478,962	-	Shew_3760	0.70	+0.7
4,478,967	+	Shew_3760	0.71	-1.5
4,478,967	+	Shew_3760	0.71	-0.6
4,478,967	+	Shew_3760	0.71	+0.5
4,478,967	-	Shew_3760	0.71	+0.4
4,478,967	+	Shew_3760	0.71	-0.0
4,478,967	+	Shew_3760	0.71	+0.1
4,478,967	+	Shew_3760	0.71	+0.2
4,478,967	+	Shew_3760	0.71	-1.8
4,478,967	+	Shew_3760	0.71	+0.4
4,478,967	+	Shew_3760	0.71	-0.1
4,478,967	+	Shew_3760	0.71	-0.2
4,478,967	-	Shew_3760	0.71	-2.2
4,478,967	+	Shew_3760	0.71	+0.2
4,478,967	+	Shew_3760	0.71	+0.2
4,478,967	+	Shew_3760	0.71	+0.5
4,478,967	-	Shew_3760	0.71	-0.9
4,478,967	+	Shew_3760	0.71	+0.4
4,478,967	+	Shew_3760	0.71	-1.6
4,478,967	+	Shew_3760	0.71	-0.1
4,478,967	+	Shew_3760	0.71	+0.2
4,478,967	+	Shew_3760	0.71	+0.3
4,478,967	+	Shew_3760	0.71	+0.4
4,478,967	+	Shew_3760	0.71	+0.2
4,478,967	+	Shew_3760	0.71	-0.2
4,478,967	+	Shew_3760	0.71	-0.1
4,478,967	+	Shew_3760	0.71	+0.5
4,478,967	-	Shew_3760	0.71	+1.0
4,478,967	+	Shew_3760	0.71	-0.2
4,478,967	+	Shew_3760	0.71	-0.2
4,478,967	+	Shew_3760	0.71	-0.1
4,478,967	+	Shew_3760	0.71	+0.4
4,478,967	+	Shew_3760	0.71	-1.1
4,478,967	+	Shew_3760	0.71	+0.1
4,478,967	+	Shew_3760	0.71	+0.1
4,478,967	+	Shew_3760	0.71	-0.4
4,478,967	+	Shew_3760	0.71	+4.8
4,478,975	-	Shew_3760	0.71	+0.4
4,478,975	-	Shew_3760	0.71	+0.2
4,478,975	-	Shew_3760	0.71	-3.8
4,478,975	-	Shew_3760	0.71	-0.1
4,478,975	-	Shew_3760	0.71	+0.6
4,478,975	-	Shew_3760	0.71	+1.4
4,478,975	-	Shew_3760	0.71	+0.2
4,478,975	-	Shew_3760	0.71	+0.1
4,478,975	-	Shew_3760	0.71	+0.9
4,478,975	-	Shew_3760	0.71	-0.5
4,478,975	-	Shew_3760	0.71	-0.4
4,478,975	-	Shew_3760	0.71	-0.1
4,478,975	-	Shew_3760	0.71	+0.2
4,478,975	-	Shew_3760	0.71	-0.0
4,478,975	-	Shew_3760	0.71	-2.4
4,478,975	-	Shew_3760	0.71	-0.8
4,478,975	-	Shew_3760	0.71	+0.1
4,478,975	-	Shew_3760	0.71	-0.1
4,478,975	-	Shew_3760	0.71	+0.4
4,478,975	-	Shew_3760	0.71	+0.4
4,478,975	-	Shew_3760	0.71	-0.2
4,478,975	-	Shew_3760	0.71	+0.2
4,478,975	-	Shew_3760	0.71	+0.0
4,478,975	-	Shew_3760	0.71	+1.4
4,478,975	-	Shew_3760	0.71	-0.2
4,478,975	-	Shew_3760	0.71	+0.1
4,478,975	-	Shew_3760	0.71	+1.1
4,478,975	-	Shew_3760	0.71	+0.1
4,478,975	-	Shew_3760	0.71	+0.5
4,478,975	-	Shew_3760	0.71	+0.9
4,478,975	-	Shew_3760	0.71	+0.3
4,478,975	-	Shew_3760	0.71	+0.0
4,478,975	-	Shew_3760	0.71	+0.5
4,478,975	-	Shew_3760	0.71	-0.9
4,478,975	-	Shew_3760	0.71	-0.2
4,478,977	+	Shew_3760	0.71	+0.8
4,478,977	+	Shew_3760	0.71	+1.5
4,478,977	+	Shew_3760	0.71	+0.4
4,478,977	+	Shew_3760	0.71	+0.3
4,478,977	+	Shew_3760	0.71	-0.4
4,478,977	+	Shew_3760	0.71	-0.1
4,478,977	+	Shew_3760	0.71	+0.1
4,478,977	+	Shew_3760	0.71	+0.3
4,478,977	+	Shew_3760	0.71	-0.1
4,478,977	+	Shew_3760	0.71	-0.3
4,478,977	+	Shew_3760	0.71	-0.5
4,478,977	+	Shew_3760	0.71	+0.4
4,478,985	-	Shew_3760	0.72	-0.8
4,478,985	-	Shew_3760	0.72	+1.0
4,478,985	-	Shew_3760	0.72	+0.7
4,478,985	-	Shew_3760	0.72	-0.8
4,478,985	-	Shew_3760	0.72	-0.1
4,478,985	-	Shew_3760	0.72	-0.5
4,478,985	-	Shew_3760	0.72	-0.3
4,478,985	-	Shew_3760	0.72	+1.0
4,478,985	-	Shew_3760	0.72	+0.3
4,478,985	-	Shew_3760	0.72	+0.3
4,478,985	-	Shew_3760	0.72	+0.6
4,478,985	-	Shew_3760	0.72	+0.1
4,478,985	-	Shew_3760	0.72	+0.5
4,478,985	-	Shew_3760	0.72	+0.1
4,478,985	-	Shew_3760	0.72	-0.6
4,478,991	+	Shew_3760	0.72	+0.3
4,479,010	-	Shew_3760	0.73	+0.3
4,479,019	-	Shew_3760	0.74	+0.8
4,479,019	+	Shew_3760	0.74	+1.5
4,479,023	+	Shew_3760	0.74	+0.2
4,479,023	+	Shew_3760	0.74	+0.3
4,479,023	+	Shew_3760	0.74	+0.2
4,479,023	+	Shew_3760	0.74	+1.2
4,479,023	+	Shew_3760	0.74	+0.4
4,479,024	+	Shew_3760	0.74	+0.2
4,479,031	-	Shew_3760	0.74	+0.4
4,479,031	-	Shew_3760	0.74	+0.1
4,479,031	-	Shew_3760	0.74	+0.1
4,479,031	-	Shew_3760	0.74	+0.3
4,479,031	-	Shew_3760	0.74	+0.5
4,479,081	+	Shew_3760	0.78	+0.4
4,479,089	-	Shew_3760	0.78	+0.5
4,479,102	+	Shew_3760	0.79	-0.2
4,479,115	+	Shew_3760	0.80	+0.1
4,479,115	+	Shew_3760	0.80	-0.0
4,479,115	+	Shew_3760	0.80	+0.3
4,479,115	+	Shew_3760	0.80	+0.3
4,479,115	+	Shew_3760	0.80	+0.6
4,479,115	+	Shew_3760	0.80	-0.7
4,479,115	+	Shew_3760	0.80	-0.0
4,479,115	+	Shew_3760	0.80	-0.8
4,479,115	+	Shew_3760	0.80	+0.4
4,479,115	+	Shew_3760	0.80	+0.1
4,479,115	+	Shew_3760	0.80	+0.9
4,479,115	+	Shew_3760	0.80	+0.4
4,479,115	+	Shew_3760	0.80	+0.1
4,479,115	+	Shew_3760	0.80	+0.2
4,479,115	+	Shew_3760	0.80	+1.0
4,479,115	+	Shew_3760	0.80	-0.3
4,479,115	+	Shew_3760	0.80	+0.4
4,479,115	+	Shew_3760	0.80	+0.8
4,479,115	+	Shew_3760	0.80	-0.7
4,479,115	+	Shew_3760	0.80	-0.6
4,479,115	+	Shew_3760	0.80	+0.1
4,479,115	+	Shew_3760	0.80	+0.5
4,479,115	+	Shew_3760	0.80	-0.5
4,479,115	+	Shew_3760	0.80	+0.1
4,479,115	+	Shew_3760	0.80	+0.2
4,479,115	+	Shew_3760	0.80	-0.3
4,479,115	+	Shew_3760	0.80	+0.1
4,479,115	+	Shew_3760	0.80	+0.2
4,479,115	+	Shew_3760	0.80	-0.4
4,479,115	+	Shew_3760	0.80	+0.5
4,479,115	+	Shew_3760	0.80	+0.4
4,479,115	+	Shew_3760	0.80	+0.1
4,479,123	-	Shew_3760	0.80	-0.1
4,479,123	-	Shew_3760	0.80	-0.4
4,479,123	-	Shew_3760	0.80	+1.4
4,479,123	-	Shew_3760	0.80	-0.1
4,479,123	-	Shew_3760	0.80	+0.0
4,479,123	-	Shew_3760	0.80	+0.4
4,479,123	-	Shew_3760	0.80	+0.4
4,479,123	-	Shew_3760	0.80	+1.2
4,479,123	-	Shew_3760	0.80	+0.8
4,479,123	-	Shew_3760	0.80	+1.8
4,479,123	-	Shew_3760	0.80	-0.3
4,479,123	-	Shew_3760	0.80	-2.2
4,479,123	-	Shew_3760	0.80	+0.7
4,479,123	-	Shew_3760	0.80	+1.0
4,479,123	-	Shew_3760	0.80	-0.5
4,479,123	-	Shew_3760	0.80	+0.0
4,479,123	-	Shew_3760	0.80	+1.1
4,479,123	-	Shew_3760	0.80	-0.6
4,479,123	-	Shew_3760	0.80	-0.1
4,479,123	-	Shew_3760	0.80	+0.4
4,479,123	-	Shew_3760	0.80	-1.4
4,479,123	-	Shew_3760	0.80	-0.6
4,479,123	-	Shew_3760	0.80	+0.4
4,479,123	-	Shew_3760	0.80	+0.3
4,479,123	-	Shew_3760	0.80	-0.4
4,479,123	-	Shew_3760	0.80	+1.4
4,479,123	-	Shew_3760	0.80	+0.2
4,479,123	-	Shew_3760	0.80	-2.6
4,479,123	-	Shew_3760	0.80	-0.3
4,479,123	-	Shew_3760	0.80	+0.9
4,479,123	-	Shew_3760	0.80	+0.5
4,479,123	-	Shew_3760	0.80	+0.4
4,479,123	-	Shew_3760	0.80	-0.3
4,479,123	-	Shew_3760	0.80	-0.2
4,479,123	-	Shew_3760	0.80	+0.1
4,479,123	-	Shew_3760	0.80	+1.3
4,479,123	-	Shew_3760	0.80	+0.2
4,479,123	-	Shew_3760	0.80	-2.8
4,479,123	-	Shew_3760	0.80	+5.4
4,479,123	-	Shew_3760	0.80	-0.6
4,479,123	-	Shew_3760	0.80	+1.1
4,479,123	-	Shew_3760	0.80	-0.9
4,479,123	-	Shew_3760	0.80	+0.6
4,479,123	-	Shew_3760	0.80	+0.4
4,479,123	-	Shew_3760	0.80	+0.5
4,479,123	-	Shew_3760	0.80	+0.1
4,479,155	+	Shew_3760	0.82	-0.1
4,479,165	-	Shew_3760	0.83	+0.3
4,479,174	-	Shew_3760	0.83	+1.1
4,479,220	+	Shew_3760	0.86	+0.3
4,479,225	-	Shew_3760	0.86	-0.2
4,479,227	+	Shew_3760	0.86	-1.2
4,479,227	+	Shew_3760	0.86	-0.4
4,479,228	-	Shew_3760	0.87	+0.1
4,479,228	+	Shew_3760	0.87	+0.1
4,479,228	+	Shew_3760	0.87	+0.5
4,479,228	+	Shew_3760	0.87	+0.3
4,479,228	-	Shew_3760	0.87	+0.2
4,479,232	+	Shew_3760	0.87	+0.4
4,479,235	-	Shew_3760	0.87	-0.1
4,479,235	-	Shew_3760	0.87	+0.3
4,479,235	-	Shew_3760	0.87	+0.3
4,479,262	+	Shew_3760	0.89	+0.3
4,479,262	+	Shew_3760	0.89	+0.4
4,479,262	+	Shew_3760	0.89	+0.5
4,479,262	+	Shew_3760	0.89	+0.2
4,479,262	+	Shew_3760	0.89	+1.1
4,479,269	+	Shew_3760	0.89	-0.1
4,479,269	+	Shew_3760	0.89	-0.9
4,479,269	+	Shew_3760	0.89	-0.3
4,479,269	+	Shew_3760	0.89	-0.7
4,479,270	-	Shew_3760	0.89	-0.7
4,479,270	-	Shew_3760	0.89	-0.4
4,479,270	-	Shew_3760	0.89	+0.3
4,479,270	-	Shew_3760	0.89	+0.4
4,479,270	-	Shew_3760	0.89	+0.3
4,479,274	+	Shew_3760	0.89	+0.6
4,479,275	+	Shew_3760	0.89	+0.5
4,479,275	+	Shew_3760	0.89	+0.3
4,479,275	+	Shew_3760	0.89	-0.3
4,479,275	+	Shew_3760	0.89	-0.5
4,479,275	+	Shew_3760	0.89	+0.2
4,479,275	+	Shew_3760	0.89	+0.8
4,479,275	+	Shew_3760	0.89	-0.3
4,479,276	+	Shew_3760	0.90	+0.3
4,479,276	+	Shew_3760	0.90	-1.2
4,479,277	-	Shew_3760	0.90	+0.4
4,479,277	-	Shew_3760	0.90	+0.2
4,479,277	-	Shew_3760	0.90	+0.3
4,479,277	-	Shew_3760	0.90	+0.3
4,479,277	-	Shew_3760	0.90	+0.2
4,479,277	-	Shew_3760	0.90	+0.4
4,479,277	-	Shew_3760	0.90	+0.4
4,479,277	-	Shew_3760	0.90	+0.0
4,479,277	-	Shew_3760	0.90	-0.7
4,479,283	-	Shew_3760	0.90	+0.4
4,479,283	-	Shew_3760	0.90	-0.5
4,479,283	-	Shew_3760	0.90	-0.3
4,479,284	+			-0.1
4,479,292	-			+0.4
4,479,292	-			+0.4
4,479,371	+			+0.1
4,479,387	+			-0.1
4,479,393	+			+0.1
4,479,398	+			+0.3
4,479,415	+			+0.5
4,479,415	+			-0.9
4,479,415	+			-0.6
4,479,419	+			-0.4
4,479,419	+			+0.4
4,479,419	+			-0.3
4,479,420	+			-0.3
4,479,420	+			+0.5
4,479,422	-			+0.9
4,479,427	-			-0.3
4,479,427	-			-0.2
4,479,427	-			-0.2
4,479,427	-			-0.1
4,479,427	-			-0.3
4,479,427	-			+0.4
4,479,448	+			+0.4
4,479,456	-			-2.5
4,479,472	-			+0.8
4,479,486	-			-0.4
4,479,493	+			+0.1
4,479,493	+			-0.0
4,479,493	+			-1.6
4,479,493	+			+0.2
4,479,493	+			+0.1
4,479,493	+			+0.1
4,479,493	+			+0.7
4,479,493	+			-0.9
4,479,493	+			+0.4
4,479,493	+			-0.3
4,479,493	+			-0.9
4,479,493	+			-0.2
4,479,494	-			+0.5
4,479,501	-			+0.1
4,479,501	-			-0.7
4,479,501	-			+0.4
4,479,501	-			+0.4
4,479,501	-			+0.6
4,479,514	+			+0.9
4,479,522	-			+1.2
4,479,524	+			+0.2
4,479,524	+			-0.1
4,479,524	+			+1.8
4,479,525	+			-0.1
4,479,525	+			-0.4
4,479,525	-			+0.4
4,479,525	+			+1.1
4,479,525	+			+0.7
4,479,527	+			+0.1
4,479,532	-			+0.1
4,479,533	-			-0.4
4,479,533	-			-0.9
4,479,535	-			+0.2
4,479,535	-			+1.8
4,479,545	-			+0.4
4,479,545	-			+0.5
4,479,627	+			+0.5
4,479,637	+			-2.7
4,479,637	+			-0.5
4,479,637	+			+0.4
4,479,637	+			+0.2
4,479,637	+			+1.5
4,479,637	+			+0.3
4,479,645	-			+0.3
4,479,645	-			+1.4
4,479,645	-			-0.3
4,479,645	-			+0.6
4,479,645	-			+0.3
4,479,645	-			+0.2
4,479,645	-			+0.2
4,479,645	-			+0.2
4,479,645	-			+0.5
4,479,726	+			+0.4
4,479,772	+			-0.1
4,479,772	-			-0.7
4,479,819	+			-0.3
4,479,844	-			-0.5
4,479,877	-	Shew_3761	0.21	+0.5
4,479,888	+	Shew_3761	0.26	+1.0
4,480,076	-			-0.6
4,480,248	-			+0.0
4,480,262	-			-0.0
4,480,289	+			-0.8
4,480,310	-			+0.5
4,480,329	+			-0.4
4,480,372	-			-1.7
4,480,372	-			+0.3
4,480,407	+			-0.2
4,480,491	-	Shew_3762	0.12	-0.3
4,480,528	+	Shew_3762	0.15	+0.0
4,480,546	-	Shew_3762	0.17	-0.4
4,480,568	-	Shew_3762	0.19	-0.0
4,480,832	-	Shew_3762	0.43	-0.6
4,480,855	+	Shew_3762	0.45	-0.6
4,480,928	-	Shew_3762	0.52	-0.6

Or see this region's nucleotide sequence